Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human -: art. no. R60

被引：70

作者：

Magness, CL

Fellin, PC

Thomas, MJ

Korth, MJ

Agy, MB

Proll, SC

Fitzgibbon, M

Scherer, CA

Miner, DG

Katze, MG

Iadonato, SP

机构：

[1] Illumigen Biosci Inc, Seattle, WA 98134 USA

[2] Univ Washington, Dept Microbiol, Seattle, WA 98195 USA

[3] Univ Washington, Washington Natl Primate Res Ctr, Seattle, WA 98195 USA

来源：

GENOME BIOLOGY | 2005年 / 6卷 / 07期

关键词：

D O I：

10.1186/gb-2005-6-7-r60

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

We report the initial sequencing and comparative analysis of the Macaca mulatta transcriptome. Cloned sequences from 11 tissues, nine animals, and three species ( M. mulatta, M. fascicularis, and M. nemestrina) were sampled, resulting in the generation of 48,642 sequence reads. These data represent an initial sampling of the putative rhesus orthologs for 6,216 human genes. Mean nucleotide diversity within M. mulatta and sequence divergence among M. fascicularis, M. nemestrina, and M. mulatta are also reported.

引用

页数：16

共 58 条

[51] High levels of Y-chromosome nucleotide diversity in the genus Pan [J].

Stone, AC ;

Griffiths, RC ;

Zegura, SL ;

Hammer, MF .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (01) :43-48

[52]

TUKEY J, 1977, EXPLORATORY DATA ANA, V29

[53] DNA sequence and comparative analysis of chimpanzee chromosome 22 [J].

Watanabe, H ;

Fujiyama, A ;

Hattori, M ;

Taylor, TD ;

Toyoda, A ;

Kuroki, Y ;

Noguchi, H ;

BenKahla, A ;

Lehrach, H ;

Sudbrak, R ;

Kube, M ;

Taenzer, S ;

Galgoczy, P ;

Platzer, M ;

Scharfe, M ;

Nordsiek, G ;

Blöcker, HB ;

Hellmann, I ;

Khaitovich, P ;

Pääbo, S ;

Reinhardt, R ;

Zheng, HJ ;

Zhang, XL ;

Zhu, GF ;

Wang, BF ;

Fu, G ;

Ren, SX ;

Zhao, GP ;

Chen, Z ;

Lee, YS ;

Cheong, JE ;

Choi, SH ;

Wu, KM ;

Liu, TT ;

Hsiao, KJ ;

Tsai, SF ;

Kim, CG ;

Oota, S ;

Kitano, T ;

Kohara, Y ;

Saitou, N ;

Park, HS ;

Wang, SY ;

Yaspo, ML ;

Sakaki, Y .

NATURE, 2004, 429 (6990) :382-388

[54] Database resources of the National Center for Biotechnology [J].

Wheeler, DL ;

Church, DM ;

Federhen, S ;

Lash, AE ;

Madden, TL ;

Pontius, JU ;

Schuler, GD ;

Schriml, LM ;

Sequeira, E ;

Tatusova, TA ;

Wagner, L .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :28-33

[55] Nucleotide diversity in gorillas [J].

Yu, N ;

Jensen-Seaman, MI ;

Chemnick, L ;

Ryder, O ;

Li, WH .

GENETICS, 2004, 166 (03) :1375-1383

[56] APOBEC3B and APOBEC3C are potent inhibitors of simian immunodeficiency virus replication [J].

Yu, Q ;

Chen, D ;

König, R ;

Mariani, R ;

Unutmaz, D ;

Landau, NR .

JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (51) :53379-53386

[57] Diversifying selection of the tumor-growth promoter angiogenin in primate evolution [J].

Zhang, JZ ;

Rosenberg, HF .

MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (04) :438-445

[58] A greedy algorithm for aligning DNA sequences [J].

Zhang, Z ;

Schwartz, S ;

Wagner, L ;

Miller, W .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2000, 7 (1-2) :203-214

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