Comparative evaluation of spectroscopic models using different multivariate statistical tools in a multicancer scenario

被引:57
作者
Ghanate, A. D.
Kothiwale, S.
Singh, S. P.
Bertrand, Dominique [2 ]
Krishna, C. Murali [1 ]
机构
[1] ACTREC, Chilakapati Lab, Tata Mem Ctr, Sector 22, Kharghar 410210, Navi Mumbai, India
[2] INRA, F-44316 Nantes 3, France
关键词
Raman spectroscopy; principal component analysis; factorial discriminant analysis; partial least square discriminant analysis; decision tree; RAMAN-SPECTROSCOPY; MUCOSAL TISSUES; DISCRIMINATION; DIAGNOSIS; CANCERS;
D O I
10.1117/1.3548303
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Cancer is now recognized as one of the major causes of morbidity and mortality. Histopathological diagnosis, the gold standard, is shown to be subjective, time consuming, prone to interobserver disagreement, and often fails to predict prognosis. Optical spectroscopic methods are being contemplated as adjuncts or alternatives to conventional cancer diagnostics. The most important aspect of these approaches is their objectivity, and multivariate statistical tools play a major role in realizing it. However, rigorous evaluation of the robustness of spectral models is a prerequisite. The utility of Raman spectroscopy in the diagnosis of cancers has been well established. Until now, the specificity and applicability of spectral models have been evaluated for specific cancer types. In this study, we have evaluated the utility of spectroscopic models representing normal and malignant tissues of the breast, cervix, colon, larynx, and oral cavity in a broader perspective, using different multivariate tests. The limit test, which was used in our earlier study, gave high sensitivity but suffered from poor specificity. The performance of other methods such as factorial discriminant analysis and partial least square discriminant analysis are at par with more complex nonlinear methods such as decision trees, but they provide very little information about the classificationmodel. This comparative study thus demonstrates not just the efficacy of Raman spectroscopic models but also the applicability and limitations of different multivariate tools for discrimination under complex conditions such as the multicancer scenario. (C) 2011 Society of Photo-Optical Instrumentation Engineers (SPIE). [DOI: 10.1117/1.3548303]
引用
收藏
页数:9
相关论文
共 30 条
[1]  
[Anonymous], 2002, Multivariate data analysis
[2]  
[Anonymous], 2013, Cengage Learning
[3]  
Barnes R.J., 1993, J NEAR INFRARED SPEC, V1, P185, DOI DOI 10.1255/JNIRS.21
[4]  
BERTRAND D, 2010, UNITE BIOPOLYMERES I
[5]   SmcHD1, containing a structural-maintenance-of-chromosomes hinge domain, has a critical role in X inactivation [J].
Blewitt, Marnie E. ;
Gendrel, Anne-Valerie ;
Pang, Zhenyi ;
Sparrow, Duncan B. ;
Whitelaw, Nadia ;
Craig, Jeffrey M. ;
Apedaile, Anwyn ;
Hilton, Douglas J. ;
Dunwoodie, Sally L. ;
Brockdorff, Neil ;
Kay, Graham F. ;
Whitelaw, Emma .
NATURE GENETICS, 2008, 40 (05) :663-669
[6]   Random forests [J].
Breiman, L .
MACHINE LEARNING, 2001, 45 (01) :5-32
[7]   Application of PLS-DA in multivariate image analysis [J].
Chevallier, Sylvie ;
Bertrand, Dominique ;
Kohler, Achim ;
Courcoux, Philippe .
JOURNAL OF CHEMOMETRICS, 2006, 20 (05) :221-229
[8]   Discrimination of normal and malignant mucosal tissues of the colon by Raman Spectroscopy [J].
Chowdary, M. V. P. ;
Kumar, K. Kalyan ;
Thakur, Keerthi ;
Anand, A. ;
Kurien, Jacob ;
Krishna, C. Murali ;
Mathew, Stanley .
PHOTOMEDICINE AND LASER SURGERY, 2007, 25 (04) :269-274
[9]   Discrimination of normal, benign, and malignant breast tissues by Raman spectroscopy [J].
Chowdary, M. V. P. ;
Kumar, K. Kalyan ;
Kurien, Jacob ;
Mathew, Stanley ;
Krishna, C. Murali .
BIOPOLYMERS, 2006, 83 (05) :556-569
[10]  
Eisenbeis R.A., 1972, Discriminant analysis and classification procedures