Towards theoretical spectroscopy with error bars: systematic quantification of the structural sensitivity of calculated spectra

被引:13
作者
Bergmann, Tobias G. [1 ]
Welzel, Michael O. [1 ]
Jacob, Christoph R. [1 ]
机构
[1] Tech Univ Carolo Wilhelmina Braunschweig, Inst Phys & Theoret Chem, Gaussstr 17, D-38106 Braunschweig, Germany
关键词
RAY-EMISSION SPECTROSCOPY; POTENTIAL-ENERGY SURFACES; UNCERTAINTY QUANTIFICATION; ABSORPTION SPECTROSCOPY; ABSOLUTE-CONFIGURATION; COMPLEXES IMPLICATIONS; STATISTICAL AVERAGE; QUANTUM-CHEMISTRY; APPROXIMATION; PROBE;
D O I
10.1039/c9sc05103a
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Molecular spectra calculated with quantum-chemical methods are subject to a number of uncertainties (e.g., errors introduced by the computational methodology) that hamper the direct comparison of experiment and computation. Judging these uncertainties is crucial for drawing reliable conclusions from the interplay of experimental and theoretical spectroscopy, but largely relies on subjective judgment. Here, we explore the application of methods from uncertainty quantification to theoretical spectroscopy, with the ultimate goal of providing systematic error bars for calculated spectra. As a first target, we consider distortions of the underlying molecular structure as one important source of uncertainty. We show that by performing a principal component analysis, the most influential collective distortions can be identified, which allows for the construction of surrogate models that are amenable to a statistical analysis of the propagation of uncertainties in the molecular structure to uncertainties in the calculated spectrum. This is applied to the calculation of X-ray emission spectra of iron carbonyl complexes, of the electronic excitation spectrum of a coumarin dye, and of the infrared spectrum of alanine. We show that with our approach it becomes possible to obtain error bars for calculated spectra that account for uncertainties in the molecular structure. This is an important first step towards systematically quantifying other relevant sources of uncertainty in theoretical spectroscopy.
引用
收藏
页码:1862 / 1877
页数:16
相关论文
共 77 条
[1]   Principal component analysis [J].
Abdi, Herve ;
Williams, Lynne J. .
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL STATISTICS, 2010, 2 (04) :433-459
[2]  
[Anonymous], 2019, SOFTWARE CHEM MAT AD
[3]  
[Anonymous], 2024, Uncertainty Quantification: Theory, Implementation, and Applications
[4]  
[Anonymous], 2010, COMPUTATIONAL SPECTR
[5]   High-resolution X-ray absorption spectroscopy of iron carbonyl complexes [J].
Atkins, Andrew J. ;
Bauer, Matthias ;
Jacob, Christoph R. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2015, 17 (21) :13937-13948
[6]   The chemical sensitivity of X-ray spectroscopy: high energy resolution XANES versus X-ray emission spectroscopy of substituted ferrocenes [J].
Atkins, Andrew J. ;
Bauer, Matthias ;
Jacob, Christoph R. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2013, 15 (21) :8095-8105
[7]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[8]   Manganese Kβ X-ray Emission Spectroscopy As a Probe of Metal-Ligand Interactions [J].
Beckwith, Martha A. ;
Roemelt, Michael ;
Collomb, Marie-Noelle ;
DuBoc, Carole ;
Weng, Tsu-Chien ;
Bergmann, Uwe ;
Glatzel, Pieter ;
Neese, Frank ;
DeBeer, Serena .
INORGANIC CHEMISTRY, 2011, 50 (17) :8397-8409
[9]   Origin-independent calculation of quadrupole intensities in X-ray spectroscopy [J].
Bernadotte, Stephan ;
Atkins, Andrew J. ;
Jacob, Christoph R. .
JOURNAL OF CHEMICAL PHYSICS, 2012, 137 (20)
[10]   Conformation-Specific Spectroscopy of Asparagine-Containing Peptides: Influence of Single and Adjacent Asn Residues on Inherent Conformational Preferences [J].
Blodgett, Karl N. ;
Fischer, Joshua L. ;
Lee, Jaeyeon ;
Choi, Soo Hyuk ;
Zwier, Timothy S. .
JOURNAL OF PHYSICAL CHEMISTRY A, 2018, 122 (44) :8762-8775