Nonequilibrium dynamics of polymer translocation and straightening

被引:172
作者
Sakaue, Takahiro [1 ]
机构
[1] Kyoto Univ, Grad Sch Sci, Dept Phys, Kyoto 6068502, Japan
来源
PHYSICAL REVIEW E | 2007年 / 76卷 / 02期
关键词
D O I
10.1103/PhysRevE.76.021803
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
When a flexible polymer is sucked into a localized small hole, the chain can initially respond only locally and the sequential nonequilibrium processes follow in line with the propagation of the tensile force along the chain backbone. We analyze this dynamical process by taking the nonuniform stretching of the polymer into account both with and without hydrodynamics interactions. Earlier conjectures on the absorption time are criticized and formulas are proposed together with time evolutions of relevant dynamical variables.
引用
收藏
页数:7
相关论文
共 16 条
[1]  
Berg H. C., 1984, Random Walks in Biology
[2]   Focused ion beam sculpted membranes for nanoscience tooling [J].
Biance, AL ;
Gierak, J ;
Bourhis, É ;
Madouri, A ;
Lafosse, X ;
Patriarche, G ;
Oukhaled, G ;
Ulysse, C ;
Galas, JC ;
Chen, Y ;
Auvray, L .
MICROELECTRONIC ENGINEERING, 2006, 83 (4-9) :1474-1477
[3]   DEFORMATIONS OF ONE TETHERED CHAIN IN STRONG FLOWS [J].
BROCHARDWYART, F .
EUROPHYSICS LETTERS, 1993, 23 (02) :105-111
[4]   POLYMER-CHAINS UNDER STRONG FLOWS - STEMS AND FLOWERS [J].
BROCHARDWYART, F .
EUROPHYSICS LETTERS, 1995, 30 (07) :387-392
[5]   Confinement-driven translocation of a flexible polymer [J].
Cacciuto, Angelo ;
Luijten, Erik .
PHYSICAL REVIEW LETTERS, 2006, 96 (23)
[6]   COIL-STRETCH TRANSITION OF DILUTE FLEXIBLE POLYMERS UNDER ULTRAHIGH VELOCITY-GRADIENTS [J].
DEGENNES, PG .
JOURNAL OF CHEMICAL PHYSICS, 1974, 60 (12) :5030-5042
[7]  
DEGENNES PG, 1979, SCALING CONCEPTS POY, P74302
[8]   Propagation and relaxation of tension in stiff polymers [J].
Hallatschek, O ;
Frey, E ;
Kroy, K .
PHYSICAL REVIEW LETTERS, 2005, 94 (07)
[9]   Driven DNA transport into an asymmetric nanometer-scale pore [J].
Henrickson, SE ;
Misakian, M ;
Robertson, B ;
Kasianowicz, JJ .
PHYSICAL REVIEW LETTERS, 2000, 85 (14) :3057-3060
[10]   Anomalous dynamics of forced translocation [J].
Kantor, Y ;
Kardar, M .
PHYSICAL REVIEW E, 2004, 69 (02) :021806-1