Solid-state nanopores towards single-molecule DNA sequencing

被引:45
作者
Goto, Yusuke [1 ]
Akahori, Rena [1 ]
Yanagi, Itaru [1 ]
Takeda, Ken-ichi [1 ]
机构
[1] Hitachi Ltd, Res & Dev Grp, Ctr Technol Innovat Healthcare, 1-280 Higashi Koigakubo, Kokubunji, Tokyo 1858601, Japan
关键词
STRANDED-DNA; TRANSLOCATION; IDENTIFICATION; NUCLEOTIDES; FABRICATION; CHALLENGES; TRANSPORT; CURRENTS; PASSAGE; SENSORS;
D O I
10.1038/s10038-019-0655-8
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Nanopore DNA sequencing offers a new paradigm owing to its extensive potential for long-read, high-throughput detection of nucleotide modification and direct RNA sequencing. Given the remarkable advances in protein nanopore sequencing technology, there is still a strong enthusiasm in exploring alternative nanopore-sequencing techniques, particularly those based on a solid-state nanopore using a semiconductor material. Since solid-state nanopores provide superior material robustness and large-scale integrability with on-chip electronics, they have the potential to surpass the limitations of their biological counterparts. However, there are key technical challenges to be addressed: the creation of an ultrasmall nanopore, fabrication of an ultrathin membrane, control of the ultrafast DNA speed and detection of four nucleotides. Extensive research efforts have been devoted to resolving these issues over the past two decades. In this review, we briefly introduce recent updates regarding solid-state nanopore technologies towards DNA sequencing. It can be envisioned that emerging technologies will offer a brand new future in DNA-sequencing technology.
引用
收藏
页码:69 / 77
页数:9
相关论文
共 84 条
[1]   DNA sequencing by nanopores: advances and challenges [J].
Agah, Shaghayegh ;
Zheng, Ming ;
Pasquali, Matteo ;
Kolomeisky, Anatoly B. .
JOURNAL OF PHYSICS D-APPLIED PHYSICS, 2016, 49 (41)
[2]   Discrimination of three types of homopolymers in single-stranded DNA with solid-state nanopores through external control of the DNA motion [J].
Akahori, Rena ;
Yanagi, Itaru ;
Goto, Yusuke ;
Harada, Kunio ;
Yokoi, Takahide ;
Takeda, Ken-ichi .
SCIENTIFIC REPORTS, 2017, 7
[3]   Slowing single-stranded DNA translocation through a solid-state nanopore by decreasing the nanopore diameter [J].
Akahori, Rena ;
Haga, Takanobu ;
Hatano, Toshiyuki ;
Yanagi, Itaru ;
Ohura, Takeshi ;
Hamamura, Hirotaka ;
Iwasaki, Tomio ;
Yokoi, Takahide ;
Anazawa, Takashi .
NANOTECHNOLOGY, 2014, 25 (27)
[4]  
Albrecht T, 2013, MICRO NANO TECHNOL, pIX
[5]   The long view on sequencing [J].
不详 .
NATURE BIOTECHNOLOGY, 2018, 36 (04) :287-287
[6]   In Situ Nanopore Fabrication and Single-Molecule Sensing with Microscale Liquid Contacts [J].
Arcadia, Christopher E. ;
Reyes, Carlos C. ;
Rosenstein, Jacob K. .
ACS NANO, 2017, 11 (05) :4907-4915
[7]  
Asghar W, 2011, NANOPORES: SENSING AND FUNDAMENTAL BIOLOGICAL INTERACTIONS, P107, DOI 10.1007/978-1-4419-8252-0_5
[8]   Nanopore-Based Identification of Individual Nucleotides for Direct RNA Sequencing [J].
Ayub, Mariam ;
Hardwick, Steven W. ;
Luisi, Ben F. ;
Bayley, Hagan .
NANO LETTERS, 2013, 13 (12) :6144-6150
[9]   The potential and challenges of nanopore sequencing [J].
Branton, Daniel ;
Deamer, David W. ;
Marziali, Andre ;
Bayley, Hagan ;
Benner, Steven A. ;
Butler, Thomas ;
Di Ventra, Massimiliano ;
Garaj, Slaven ;
Hibbs, Andrew ;
Huang, Xiaohua ;
Jovanovich, Stevan B. ;
Krstic, Predrag S. ;
Lindsay, Stuart ;
Ling, Xinsheng Sean ;
Mastrangelo, Carlos H. ;
Meller, Amit ;
Oliver, John S. ;
Pershin, Yuriy V. ;
Ramsey, J. Michael ;
Riehn, Robert ;
Soni, Gautam V. ;
Tabard-Cossa, Vincent ;
Wanunu, Meni ;
Wiggin, Matthew ;
Schloss, Jeffery A. .
NATURE BIOTECHNOLOGY, 2008, 26 (10) :1146-1153
[10]   Kinetics of nanopore fabrication during controlled breakdown of dielectric membranes in solution [J].
Briggs, Kyle ;
Charron, Martin ;
Kwok, Harold ;
Le, Timothea ;
Chahal, Sanmeet ;
Bustamante, Jose ;
Waugh, Matthew ;
Tabard-Cossa, Vincent .
NANOTECHNOLOGY, 2015, 26 (08)