Molecular Characterization of Hepatitis C Virus Genotype 4 Sequences in HIV-Coinfected Patients From Argentina

被引:5
作者
Bolcic, F. [1 ,2 ]
Jones, L. R. [2 ,3 ]
Laufer, N. [1 ,2 ]
Quarleri, J. [1 ,2 ]
机构
[1] Univ Buenos Aires, Sch Med, Argentinean Natl Reference Ctr AIDS, Dept Microbiol, Buenos Aires, DF, Argentina
[2] Natl Sci & Tech Res Council, Buenos Aires, DF, Argentina
[3] Photobiol Stn, Div Mol Biol, Playa Union, Chubut, Argentina
关键词
hepatitis C virus; genotype; 4; HIV-coinfection; Argentina; PHYLOGENETIC ANALYSIS; HCV GENOTYPE; NOMENCLATURE; ALIGNMENT; DATABASE; MAFFT;
D O I
10.1002/jmv.22068
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The prevalence of hepatitis C virus genotype 4 (HCV-4) is increasing in different parts of the World but in Latin America the data are still scarce. We aimed to characterize HCV-4 isolates from 38:3 HIV-coinfected patients in Argentina. Sequence analyses were based on the nonstructural 5B region of HCV. Results from 18 patients indicated a genetic heterogeneity that involved three genotype 4 subtypes. Sequences were ascribed to subtype 4d (67%), 4a (22%), and 4m (11%). In spite of different sources of transmission were defined among patients, no statistical association was found with the genotype 4 subtype. The scenario is also compatible with multiple importation of the epidemic and there is no evidence for transmission-specific clusters or network-like transmission of HCV-4. This HCV-4 does not represent a recent introduction in Argentina, it circulates in all transmission groups and its presence is increasing among HIV-infected patients. J. Med. Virol. 83:935-940, 2011. (C) 2011 Wiley-Liss, Inc.
引用
收藏
页码:935 / 940
页数:6
相关论文
共 32 条
[1]   HLA-Driven Convergence of HIV-1 Viral Subtypes B and F Toward the Adaptation to Immune Responses in Human Populations [J].
Alberto Dilernia, Dario ;
Jones, Leandro ;
Rodriguez, Sabrina ;
Turk, Gabriela ;
Rubio, Andrea E. ;
Pampuro, Sandra ;
Gomez-Carrillo, Manuel ;
Bautista, Christian ;
Deluchi, Gabriel ;
Benetucci, Jorge ;
Beatriz Lasala, Maria ;
Lourtau, Leonardo ;
Losso, Marcelo Horacio ;
Perez, Hector ;
Cahn, Pedro ;
Salomon, Horacio .
PLOS ONE, 2008, 3 (10)
[2]   Phylogenetic characterization of genotype 4 hepatitis C virus isolates from Argentina [J].
Alfonso, V ;
Flichman, D ;
Sookoian, S ;
Mbayed, VA ;
Campos, RH .
JOURNAL OF CLINICAL MICROBIOLOGY, 2001, 39 (05) :1989-1992
[3]  
Bolcic Federico, 2008, Acta Gastroenterol Latinoam, V38, P307
[4]   An overview about hepatitis C: A devastating virus [J].
Bostan, Nazish ;
Mahmood, Tariq .
CRITICAL REVIEWS IN MICROBIOLOGY, 2010, 36 (02) :91-133
[5]   GENETIC ORGANIZATION AND DIVERSITY OF THE HEPATITIS-C VIRUS [J].
CHOO, QL ;
RICHMAN, KH ;
HAN, JH ;
BERGER, K ;
LEE, C ;
DONG, C ;
GALLEGOS, C ;
COIT, D ;
MEDINASELBY, A ;
BARR, PJ ;
WEINER, AJ ;
BRADLEY, DW ;
KUO, G ;
HOUGHTON, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1991, 88 (06) :2451-2455
[6]   euHCVdb:: the European hepatitis C virus database [J].
Combet, Christophe ;
Garnier, Nicolas ;
Charavay, Line ;
Grando, Delphine ;
Crisan, Daniel ;
Lopez, Julien ;
Dehne-Garcia, Alexandre ;
Geourjon, Christophe ;
Bettler, Emmanuel ;
Hulo, Chantal ;
Le Mercier, Philippe ;
Bartenschlager, Ralf ;
Diepolder, Helmut ;
Moradpour, Darius ;
Pawlotsky, Jean-Michel ;
Rice, Charles M. ;
Trepo, Christian ;
Penin, Francois ;
Deleage, Gilbert .
NUCLEIC ACIDS RESEARCH, 2007, 35 :D363-D366
[7]   Emergence of Hepatitis C Virus Genotype 4: Phylogenetic Analysis Reveals Three Distinct Epidemiological Profiles [J].
de Bruijne, Joep ;
Schinkel, Janke ;
Prins, Maria ;
Koekkoek, Sylvie M. ;
Aronson, Sem J. ;
van Ballegooijen, Marijn W. ;
Reesink, Hendrik W. ;
Molenkamp, Richard ;
van de Laar, Thijs J. W. .
JOURNAL OF CLINICAL MICROBIOLOGY, 2009, 47 (12) :3832-3838
[8]   Molecular and Epidemiological Profiles of Hepatitis C Virus Genotype 4 in Denmark [J].
Eriksen, Mette Brandt ;
Jorgensen, Louise Bruun ;
Krarup, Henrik ;
Laursen, Alex Lund ;
Christensen, Peer Brehm ;
Moller, Axel ;
Schlichting, Poul ;
Kuiken, Carla ;
Bukh, Jens ;
Weis, Nina .
JOURNAL OF MEDICAL VIROLOGY, 2010, 82 (11) :1869-1877
[9]  
GIRIBET CG, 2005, SYST BIOL, V54, P176
[10]   TNT, a free program for phylogenetic analysis [J].
Goloboff, Pablo A. ;
Farris, James S. ;
Nixon, Kevin C. .
CLADISTICS, 2008, 24 (05) :774-786