Patterns of beauty - omics meets plant development

被引:26
作者
Hennig, Lars
机构
[1] Swiss Fed Inst Technol, Inst Plant Sci, CH-8092 Zurich, Switzerland
[2] Swiss Fed Inst Technol, Zurich Basel Plant Sci Ctr, CH-8092 Zurich, Switzerland
关键词
D O I
10.1016/j.tplants.2007.05.002
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Developmental biology aims to identify mechanisms that govern cell proliferation and differentiation in the body plan formation of multicellular organisms. In the past, developmental biologists described how anatomy and morphology are established during ontogenesis, and developmental geneticists identified many developmental regulators. In contrast to the traditional approaches that mostly focus on one or a few genes at a time, highly parallel profiling technologies have been developed for use in biological research over the past decade. Such parallel profiling technologies probe many genes, transcripts, proteins or metabolites at once. In this review, I discuss the growing impact of transcriptomics, proteomics, metabolomics and modelling on plant developmental biology. Novel profiling technologies will not make traditional gene-centred approaches obsolete but should instead complement forward developmental genetics. © 2007 Elsevier Ltd. All rights reserved.
引用
收藏
页码:287 / 293
页数:7
相关论文
共 79 条
[1]   Amino acid analysis in five pooled single plant cell samples using capillary electrophoresis coupled to laser-induced fluorescence detection [J].
Arlt, K ;
Brandt, S ;
Kehr, J .
JOURNAL OF CHROMATOGRAPHY A, 2001, 926 (02) :319-325
[2]   Sequencing single molecules of DNA [J].
Bayley, Hagan .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2006, 10 (06) :628-637
[3]   Characterization of Antirrhinum petal development and identification of target genes of the class B MADS box gene DEFICIENS [J].
Bey, M ;
Stüber, K ;
Fellenberg, K ;
Schwarz-Sommera, Z ;
Sommer, H ;
Saedler, H ;
Zachgo, S .
PLANT CELL, 2004, 16 (12) :3197-3215
[4]   Cell type-specific expression profiting in plants via cell sorting of protoplasts from fluorescent reporter lines [J].
Birnbaum, K ;
Jung, JW ;
Wang, JY ;
Lambert, GM ;
Hirst, JA ;
Galbraith, DW ;
Benfey, PN .
NATURE METHODS, 2005, 2 (08) :615-619
[5]   A gene expression map of the Arabidopsis root [J].
Birnbaum, K ;
Shasha, DE ;
Wang, JY ;
Jung, JW ;
Lambert, GM ;
Galbraith, DW ;
Benfey, PN .
SCIENCE, 2003, 302 (5652) :1956-1960
[6]   Unraveling the dynamic transcriptome [J].
Brady, Siobhan M. ;
Long, Terri A. ;
Benfey, Philip N. .
PLANT CELL, 2006, 18 (09) :2101-2111
[7]   Using array hybridization to monitor gene expression at the single cell level [J].
Brandt, S ;
Kloska, S ;
Altmann, T ;
Kehr, J .
JOURNAL OF EXPERIMENTAL BOTANY, 2002, 53 (379) :2315-2323
[8]   Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays [J].
Brenner, S ;
Johnson, M ;
Bridgham, J ;
Golda, G ;
Lloyd, DH ;
Johnson, D ;
Luo, SJ ;
McCurdy, S ;
Foy, M ;
Ewan, M ;
Roth, R ;
George, D ;
Eletr, S ;
Albrecht, G ;
Vermaas, E ;
Williams, SR ;
Moon, K ;
Burcham, T ;
Pallas, M ;
DuBridge, RB ;
Kirchner, J ;
Fearon, K ;
Mao, J ;
Corcoran, K .
NATURE BIOTECHNOLOGY, 2000, 18 (06) :630-634
[9]   Activation of a floral homeotic gene in Arabidopsis [J].
Busch, MA ;
Bomblies, K ;
Weigel, D .
SCIENCE, 1999, 285 (5427) :585-587
[10]   Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior [J].
Carrari, Fernando ;
Baxter, Charles ;
Usadel, Bjorn ;
Urbanczyk-Wochniak, Ewa ;
Zanor, Maria-Ines ;
Nunes-Nesi, Adriano ;
Nikiforova, Victoria ;
Centero, Danilo ;
Ratzka, Antje ;
Pauly, Markus ;
Sweetlove, Lee j ;
Fernie, Alisdair R. .
PLANT PHYSIOLOGY, 2006, 142 (04) :1380-1396