共 164 条
RNA Editing Adds Flavor to Complexity
被引:10
作者:

Sie, C. P. Godfried
论文数: 0 引用数: 0
h-index: 0
机构:
Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA

Kuchka, M.
论文数: 0 引用数: 0
h-index: 0
机构:
Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA
机构:
[1] Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA
关键词:
RNA editing;
ADAR;
inosine;
deamination;
ncRNAs;
transcriptome complexity;
DOUBLE-STRANDED-RNA;
DEAMINASE ADAR1 GENE;
LONG NONCODING RNAS;
EPSTEIN-BARR-VIRUS;
L1;
RETROTRANSPOSITION;
ADENOSINE-DEAMINASE;
MESSENGER-RNA;
HUMAN GENOME;
CAENORHABDITIS-ELEGANS;
HUMAN TRANSCRIPTOME;
D O I:
10.1134/S0006297911080025
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
A-to-I RNA editing results in the conversion of single adenosines into inosines, which alters coding and non-coding sequences in RNA molecules, increasing the complexity of the transcriptome. This modification is vital in a number of brain-specific coding transcripts, where the introduced alternative amino acids impact protein function substantially. Indeed, deviations from normal editing levels have been detected in tissues from individuals affected by neurological diseases and cancer, underscoring the importance of correct and regulated editing. Since the discovery of A-to-I RNA editing, considerable effort has been made to uncover additional editing targets and analyze the subsequent functional consequences for the recoded substrates. The effects of editing on non-coding RNAs (ncRNAs) such as microRNAs (miRNAs) or long ncRNAs are less well explored. ncRNAs act as regulators of gene expression through chromatin modification, imprinting, alternative splicing, and mRNA translation and stability. Editing has the potential to dynamically alter and diversify ncRNAs, thereby redirecting their functions. How editing intersects, interferes with, and modulates the roles of ncRNAs, possibly in response to external stimuli, therefore warrants a deeper look. This review discusses recent advances and new insights in the field.
引用
收藏
页码:869 / 881
页数:13
相关论文
共 164 条
[1]
Widespread A-to-I RNA editing of alu-containing mRNAs in the human transcriptome
[J].
Athanasiadis, A
;
Rich, A
;
Maas, S
.
PLOS BIOLOGY,
2004, 2 (12)
:2144-2158

Athanasiadis, A
论文数: 0 引用数: 0
h-index: 0
机构: Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA

Rich, A
论文数: 0 引用数: 0
h-index: 0
机构: Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA

Maas, S
论文数: 0 引用数: 0
h-index: 0
机构:
Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA Lehigh Univ, Dept Biol Sci, Bethlehem, PA 18015 USA
[2]
MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004)
[J].
Bartel, David P.
.
CELL,
2007, 131 (04)
:11-29

Bartel, David P.
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
[3]
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes
[J].
Baskerville, S
;
Bartel, DP
.
RNA,
2005, 11 (03)
:241-247

Baskerville, S
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Bartel, DP
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
[4]
RNA editing by adenosine deaminases that act on RNA
[J].
Bass, BL
.
ANNUAL REVIEW OF BIOCHEMISTRY,
2002, 71
:817-846

Bass, BL
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Utah, Sch Med, Dept Biochem, Salt Lake City, UT 84132 USA Univ Utah, Sch Med, Dept Biochem, Salt Lake City, UT 84132 USA
[5]
Alu repeats and human genomic diversity
[J].
Batzer, MA
;
Deininger, PL
.
NATURE REVIEWS GENETICS,
2002, 3 (05)
:370-379

Batzer, MA
论文数: 0 引用数: 0
h-index: 0
机构: Louisiana State Univ, Biol Computat & Visualizat Ctr, Dept Biol Sci, Baton Rouge, LA 70803 USA

Deininger, PL
论文数: 0 引用数: 0
h-index: 0
机构: Louisiana State Univ, Biol Computat & Visualizat Ctr, Dept Biol Sci, Baton Rouge, LA 70803 USA
[6]
Somatic expression of LINE-1 elements in human tissues
[J].
Belancio, Victoria P.
;
Roy-Engel, Astrid M.
;
Pochampally, Radhika R.
;
Deininger, Prescott
.
NUCLEIC ACIDS RESEARCH,
2010, 38 (12)
:3909-3922

Belancio, Victoria P.
论文数: 0 引用数: 0
h-index: 0
机构:
Tulane Univ, Tulane Canc Ctr, New Orleans, LA 70112 USA
Tulane Univ, Tulane Sch Med, Dept Struct & Cellular Biol, New Orleans, LA 70112 USA
Tulane Univ, Tulane Ctr Aging, New Orleans, LA 70112 USA Tulane Univ, Dept Epidemiol, New Orleans, LA 70112 USA

Roy-Engel, Astrid M.
论文数: 0 引用数: 0
h-index: 0
机构:
Tulane Univ, Dept Epidemiol, New Orleans, LA 70112 USA
Tulane Univ, Tulane Canc Ctr, New Orleans, LA 70112 USA Tulane Univ, Dept Epidemiol, New Orleans, LA 70112 USA

Pochampally, Radhika R.
论文数: 0 引用数: 0
h-index: 0
机构:
Tulane Univ, Ctr Gene Therapy, New Orleans, LA 70112 USA
Tulane Univ, Tulane Canc Ctr, New Orleans, LA 70112 USA Tulane Univ, Dept Epidemiol, New Orleans, LA 70112 USA

Deininger, Prescott
论文数: 0 引用数: 0
h-index: 0
机构:
Tulane Univ, Dept Epidemiol, New Orleans, LA 70112 USA
Tulane Univ, Tulane Canc Ctr, New Orleans, LA 70112 USA Tulane Univ, Dept Epidemiol, New Orleans, LA 70112 USA
[7]
Active Alu retrotransposons in the human genome
[J].
Bennett, E. Andrew
;
Keller, Heiko
;
Mills, Ryan E.
;
Schmidt, Steffen
;
Moran, John V.
;
Weichenrieder, Oliver
;
Devine, Scott E.
.
GENOME RESEARCH,
2008, 18 (12)
:1875-1883

Bennett, E. Andrew
论文数: 0 引用数: 0
h-index: 0
机构:
Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA
Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA
Emory Univ, Sch Med, Ctr Bioinformat, Atlanta, GA 30322 USA Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA

Keller, Heiko
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Dev Biol, Dept Biochem, D-72076 Tubingen, Germany Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA

Mills, Ryan E.
论文数: 0 引用数: 0
h-index: 0
机构:
Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA
Emory Univ, Sch Med, Ctr Bioinformat, Atlanta, GA 30322 USA Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA

Schmidt, Steffen
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Dev Biol, Dept Biochem, D-72076 Tubingen, Germany Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA

Moran, John V.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Michigan, Sch Med, Dept Human Genet, Howard Hughes Med Inst, Ann Arbor, MI 48109 USA Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA

Weichenrieder, Oliver
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Dev Biol, Dept Biochem, D-72076 Tubingen, Germany Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA

Devine, Scott E.
论文数: 0 引用数: 0
h-index: 0
机构:
Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA
Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA
Emory Univ, Sch Med, Ctr Bioinformat, Atlanta, GA 30322 USA Emory Univ, Sch Med, Genet & Mol Biol Grad Program, Atlanta, GA 30322 USA
[8]
RNA-editing of the 5-HT2C receptor alters agonist-receptor-effector coupling specificity
[J].
Berg, KA
;
Cropper, JD
;
Niswender, CM
;
Sanders-Bush, E
;
Emeson, RB
;
Clarke, WP
.
BRITISH JOURNAL OF PHARMACOLOGY,
2001, 134 (02)
:386-392

Berg, KA
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Hlth Sci Ctr, Dept Pharmacol, San Antonio, TX 78229 USA

Cropper, JD
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Hlth Sci Ctr, Dept Pharmacol, San Antonio, TX 78229 USA

Niswender, CM
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Hlth Sci Ctr, Dept Pharmacol, San Antonio, TX 78229 USA

Sanders-Bush, E
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Hlth Sci Ctr, Dept Pharmacol, San Antonio, TX 78229 USA

Emeson, RB
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Hlth Sci Ctr, Dept Pharmacol, San Antonio, TX 78229 USA

Clarke, WP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Texas, Hlth Sci Ctr, Dept Pharmacol, San Antonio, TX 78229 USA
[9]
Control of human potassium channel inactivation by editing of a small mRNA hairpin
[J].
Bhalla, T
;
Rosenthal, JJC
;
Holmgren, M
;
Reenan, R
.
NATURE STRUCTURAL & MOLECULAR BIOLOGY,
2004, 11 (10)
:950-956

Bhalla, T
论文数: 0 引用数: 0
h-index: 0
机构: Univ Connecticut, Ctr Hlth, Dept Genet & Dev Biol, Farmington, CT 06030 USA

Rosenthal, JJC
论文数: 0 引用数: 0
h-index: 0
机构: Univ Connecticut, Ctr Hlth, Dept Genet & Dev Biol, Farmington, CT 06030 USA

Holmgren, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Connecticut, Ctr Hlth, Dept Genet & Dev Biol, Farmington, CT 06030 USA

Reenan, R
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Connecticut, Ctr Hlth, Dept Genet & Dev Biol, Farmington, CT 06030 USA Univ Connecticut, Ctr Hlth, Dept Genet & Dev Biol, Farmington, CT 06030 USA
[10]
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
[J].
Birney, Ewan
;
Stamatoyannopoulos, John A.
;
Dutta, Anindya
;
Guigo, Roderic
;
Gingeras, Thomas R.
;
Margulies, Elliott H.
;
Weng, Zhiping
;
Snyder, Michael
;
Dermitzakis, Emmanouil T.
;
Stamatoyannopoulos, John A.
;
Thurman, Robert E.
;
Kuehn, Michael S.
;
Taylor, Christopher M.
;
Neph, Shane
;
Koch, Christoph M.
;
Asthana, Saurabh
;
Malhotra, Ankit
;
Adzhubei, Ivan
;
Greenbaum, Jason A.
;
Andrews, Robert M.
;
Flicek, Paul
;
Boyle, Patrick J.
;
Cao, Hua
;
Carter, Nigel P.
;
Clelland, Gayle K.
;
Davis, Sean
;
Day, Nathan
;
Dhami, Pawandeep
;
Dillon, Shane C.
;
Dorschner, Michael O.
;
Fiegler, Heike
;
Giresi, Paul G.
;
Goldy, Jeff
;
Hawrylycz, Michael
;
Haydock, Andrew
;
Humbert, Richard
;
James, Keith D.
;
Johnson, Brett E.
;
Johnson, Ericka M.
;
Frum, Tristan T.
;
Rosenzweig, Elizabeth R.
;
Karnani, Neerja
;
Lee, Kirsten
;
Lefebvre, Gregory C.
;
Navas, Patrick A.
;
Neri, Fidencio
;
Parker, Stephen C. J.
;
Sabo, Peter J.
;
Sandstrom, Richard
;
Shafer, Anthony
.
NATURE,
2007, 447 (7146)
:799-816

Birney, Ewan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Stamatoyannopoulos, John A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dutta, Anindya
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Guigo, Roderic
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Gingeras, Thomas R.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Margulies, Elliott H.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Weng, Zhiping
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Snyder, Michael
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dermitzakis, Emmanouil T.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Stamatoyannopoulos, John A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Thurman, Robert E.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Kuehn, Michael S.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Taylor, Christopher M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Neph, Shane
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Koch, Christoph M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Asthana, Saurabh
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Malhotra, Ankit
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Adzhubei, Ivan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Greenbaum, Jason A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Andrews, Robert M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Flicek, Paul
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Boyle, Patrick J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Cao, Hua
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Carter, Nigel P.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Clelland, Gayle K.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Davis, Sean
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Day, Nathan
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dhami, Pawandeep
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dillon, Shane C.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Dorschner, Michael O.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Fiegler, Heike
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Giresi, Paul G.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Goldy, Jeff
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Hawrylycz, Michael
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Haydock, Andrew
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Humbert, Richard
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

James, Keith D.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Johnson, Brett E.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Johnson, Ericka M.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Frum, Tristan T.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Rosenzweig, Elizabeth R.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Karnani, Neerja
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Lee, Kirsten
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Lefebvre, Gregory C.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Navas, Patrick A.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Neri, Fidencio
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Parker, Stephen C. J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Sabo, Peter J.
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Sandstrom, Richard
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

Shafer, Anthony
论文数: 0 引用数: 0
h-index: 0
机构: EMBL European Bioinformat Inst, Cambridge CB10 1SD, England