Deep mutational scanning: assessing protein function on a massive scale

被引:146
作者
Araya, Carlos L. [1 ]
Fowler, Douglas M. [1 ]
机构
[1] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA
基金
美国国家卫生研究院;
关键词
GENOME-WIDE ANALYSIS; NEXT-GENERATION; PHAGE DISPLAY; NUCLEOTIDE RESOLUTION; RAPID CONSTRUCTION; YEAST GENOME; LANDSCAPES; EVOLUTION; MUTAGENESIS; REPERTOIRE;
D O I
10.1016/j.tibtech.2011.04.003
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Analysis of protein mutants is an effective means to understand their function. Protein display is an approach that allows large numbers of mutants of a protein to be selected based on their activity, but only a handful with maximal activity have been traditionally identified for subsequent functional analysis. However, the recent application of high-throughput sequencing (HTS) to protein display and selection has enabled simultaneous assessment of the function of hundreds of thousands of mutants that span the activity range from high to low. Such deep mutational scanning approaches are rapid and inexpensive with the potential for broad utility. In this review, we discuss the emergence of deep mutational scanning, the challenges associated with its use and some of its exciting applications.
引用
收藏
页码:435 / 442
页数:8
相关论文
共 71 条
  • [11] Using T7 phage display to select GFP-based binders
    Dai, M.
    Temirov, J.
    Pesavento, E.
    Kiss, C.
    Velappan, N.
    Pavlik, P.
    Werner, J. H.
    Bradbury, A. R. M.
    [J]. PROTEIN ENGINEERING DESIGN & SELECTION, 2008, 21 (07) : 413 - 424
  • [12] Rapid interactome profiling by massive sequencing
    Di Niro, Roberto
    Sulic, Ana-Marija
    Mignone, Flavio
    D'Angelo, Sara
    Bordoni, Roberta
    Iacono, Michele
    Marzari, Roberto
    Gaiotto, Tiziano
    Lavric, Miha
    Bradbury, Andrew R. M.
    Biancone, Luigi
    Zevin-Sonkin, Dina
    De Bellis, Gianluca
    Santoro, Claudio
    Sblattero, Daniele
    [J]. NUCLEIC ACIDS RESEARCH, 2010, 38 (09) : e110 - e110
  • [13] Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis
    Dias-Neto, Emmanuel
    Nunes, Diana N.
    Giordano, Ricardo J.
    Sun, Jessica
    Botz, Gregory H.
    Yang, Kuan
    Setubal, Joao C.
    Pasqualini, Renata
    Arap, Wadih
    [J]. PLOS ONE, 2009, 4 (12):
  • [14] Somatic mutations affect key pathways in lung adenocarcinoma
    Ding, Li
    Getz, Gad
    Wheeler, David A.
    Mardis, Elaine R.
    McLellan, Michael D.
    Cibulskis, Kristian
    Sougnez, Carrie
    Greulich, Heidi
    Muzny, Donna M.
    Morgan, Margaret B.
    Fulton, Lucinda
    Fulton, Robert S.
    Zhang, Qunyuan
    Wendl, Michael C.
    Lawrence, Michael S.
    Larson, David E.
    Chen, Ken
    Dooling, David J.
    Sabo, Aniko
    Hawes, Alicia C.
    Shen, Hua
    Jhangiani, Shalini N.
    Lewis, Lora R.
    Hall, Otis
    Zhu, Yiming
    Mathew, Tittu
    Ren, Yanru
    Yao, Jiqiang
    Scherer, Steven E.
    Clerc, Kerstin
    Metcalf, Ginger A.
    Ng, Brian
    Milosavljevic, Aleksandar
    Gonzalez-Garay, Manuel L.
    Osborne, John R.
    Meyer, Rick
    Shi, Xiaoqi
    Tang, Yuzhu
    Koboldt, Daniel C.
    Lin, Ling
    Abbott, Rachel
    Miner, Tracie L.
    Pohl, Craig
    Fewell, Ginger
    Haipek, Carrie
    Schmidt, Heather
    Dunford-Shore, Brian H.
    Kraja, Aldi
    Crosby, Seth D.
    Sawyer, Christopher S.
    [J]. NATURE, 2008, 455 (7216) : 1069 - 1075
  • [15] A three-dimensional model of the yeast genome
    Duan, Zhijun
    Andronescu, Mirela
    Schutz, Kevin
    McIlwain, Sean
    Kim, Yoo Jung
    Lee, Choli
    Shendure, Jay
    Fields, Stanley
    Blau, C. Anthony
    Noble, William S.
    [J]. NATURE, 2010, 465 (7296) : 363 - 367
  • [16] Real-Time DNA Sequencing from Single Polymerase Molecules
    Eid, John
    Fehr, Adrian
    Gray, Jeremy
    Luong, Khai
    Lyle, John
    Otto, Geoff
    Peluso, Paul
    Rank, David
    Baybayan, Primo
    Bettman, Brad
    Bibillo, Arkadiusz
    Bjornson, Keith
    Chaudhuri, Bidhan
    Christians, Frederick
    Cicero, Ronald
    Clark, Sonya
    Dalal, Ravindra
    deWinter, Alex
    Dixon, John
    Foquet, Mathieu
    Gaertner, Alfred
    Hardenbol, Paul
    Heiner, Cheryl
    Hester, Kevin
    Holden, David
    Kearns, Gregory
    Kong, Xiangxu
    Kuse, Ronald
    Lacroix, Yves
    Lin, Steven
    Lundquist, Paul
    Ma, Congcong
    Marks, Patrick
    Maxham, Mark
    Murphy, Devon
    Park, Insil
    Pham, Thang
    Phillips, Michael
    Roy, Joy
    Sebra, Robert
    Shen, Gene
    Sorenson, Jon
    Tomaney, Austin
    Travers, Kevin
    Trulson, Mark
    Vieceli, John
    Wegener, Jeffrey
    Wu, Dawn
    Yang, Alicia
    Zaccarin, Denis
    [J]. SCIENCE, 2009, 323 (5910) : 133 - 138
  • [17] Test of synergistic interactions among deleterious mutations in bacteria
    Elena, SF
    Lenski, RE
    [J]. NATURE, 1997, 390 (6658) : 395 - 398
  • [18] Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing
    Ernst, Andreas
    Gfeller, David
    Kan, Zhengyan
    Seshagiri, Somasekar
    Kim, Philip M.
    Bader, Gary D.
    Sidhu, Sachdev S.
    [J]. MOLECULAR BIOSYSTEMS, 2010, 6 (10) : 1782 - 1790
  • [19] Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library
    Feldhaus, MJ
    Siegel, RW
    Opresko, LK
    Coleman, JR
    Feldhaus, JMW
    Yeung, YA
    Cochran, JR
    Heinzelman, P
    Colby, D
    Swers, J
    Graff, C
    Wiley, HS
    Wittrup, KD
    [J]. NATURE BIOTECHNOLOGY, 2003, 21 (02) : 163 - 170
  • [20] Sequencing antibody repertoires The next generation
    Fischer, Nicolas
    [J]. MABS, 2011, 3 (01) : 17 - 20