Building biological foundries for next-generation synthetic biology

被引:22
作者
Chao Ran [1 ,2 ]
Yuan YongBo [2 ]
Zhao HuiMin [1 ,2 ,3 ]
机构
[1] Univ Illinois, Dept Chem & Biomol Engn, Urbana, IL 61801 USA
[2] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Bioengn, Dept Chem, Ctr Biophys & Computat Biol, Urbana, IL 61801 USA
基金
美国国家卫生研究院;
关键词
biofabrication; automation; metabolic engineering; biosystems design; DNA assembly; DNA sequencing; metabolite analysis; COMBINATORIAL GENETIC-TRANSFORMATION; SUBTILIS GENOME VECTOR; HIGH-THROUGHPUT; HOMOLOGOUS RECOMBINATION; SACCHAROMYCES-CEREVISIAE; MASS-SPECTROMETRY; DIRECT CLONING; CAROTENOID PATHWAY; ESCHERICHIA-COLI; SINGLE CELLS;
D O I
10.1007/s11427-015-4866-8
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Synthetic biology is an interdisciplinary field that takes top-down approaches to understand and engineer biological systems through design-build-test cycles. A number of advances in this relatively young field have greatly accelerated such engineering cycles. Specifically, various innovative tools were developed for in silico biosystems design, DNA de novo synthesis and assembly, construct verification, as well as metabolite analysis, which have laid a solid foundation for building biological foundries for rapid prototyping of improved or novel biosystems. This review summarizes the state-of-the-art technologies for synthetic biology and discusses the challenges to establish such biological foundries.
引用
收藏
页码:658 / 665
页数:8
相关论文
共 77 条
[1]   An Introduction to Liquid Chromatography-Mass Spectrometry Instrumentation Applied in Plant Metabolomic Analyses [J].
Allwood, J. William ;
Goodacre, Royston .
PHYTOCHEMICAL ANALYSIS, 2010, 21 (01) :33-47
[2]   BglBricks: A flexible standard for biological part assembly [J].
Anderson J.C. ;
Dueber J.E. ;
Leguia M. ;
Wu G.C. ;
Arkin A.P. ;
Keasling J.D. .
Journal of Biological Engineering, 4 (1)
[3]   Environmentally controlled invasion of cancer cells by engineered bacteria [J].
Anderson, JC ;
Clarke, EJ ;
Arkin, AP ;
Voigt, CA .
JOURNAL OF MOLECULAR BIOLOGY, 2006, 355 (04) :619-627
[4]   Counter-selection facilitated plasmid construction by homologous recombination in Saccharomyces cerevisiae [J].
Anderson, PR ;
Haj-Ahmad, Y .
BIOTECHNIQUES, 2003, 35 (04) :692-+
[5]   Total Synthesis of a Functional Designer Eukaryotic Chromosome [J].
Annaluru, Narayana ;
Muller, Heloise ;
Mitchell, Leslie A. ;
Ramalingam, Sivaprakash ;
Stracquadanio, Giovanni ;
Richardson, Sarah M. ;
Dymond, Jessica S. ;
Kuang, Zheng ;
Scheifele, Lisa Z. ;
Cooper, Eric M. ;
Cai, Yizhi ;
Zeller, Karen ;
Agmon, Neta ;
Han, Jeffrey S. ;
Hadjithomas, Michalis ;
Tullman, Jennifer ;
Caravelli, Katrina ;
Cirelli, Kimberly ;
Guo, Zheyuan ;
London, Viktoriya ;
Yeluru, Apurva ;
Murugan, Sindurathy ;
Kandavelou, Karthikeyan ;
Agier, Nicolas ;
Fischer, Gilles ;
Yang, Kun ;
Martin, J. Andrew ;
Bilgel, Murat ;
Bohutski, Pavlo ;
Boulier, Kristin M. ;
Capaldo, Brian J. ;
Chang, Joy ;
Charoen, Kristie ;
Choi, Woo Jin ;
Deng, Peter ;
DiCarlo, James E. ;
Doong, Judy ;
Dunn, Jessilyn ;
Feinberg, Jason I. ;
Fernandez, Christopher ;
Floria, Charlotte E. ;
Gladowski, David ;
Hadidi, Pasha ;
Ishizuka, Isabel ;
Jabbari, Javaneh ;
Lau, Calvin Y. L. ;
Lee, Pablo A. ;
Li, Sean ;
Lin, Denise ;
Linder, Matthias E. .
SCIENCE, 2014, 344 (6179) :55-58
[6]  
Appleton E, 2014, NAT METHODS, V11, P657, DOI [10.1038/NMETH.2939, 10.1038/nmeth.2939]
[7]   Engineering life: Building a fab for biology [J].
Baker, David ;
Group, B. I. O. F. A. B. ;
Church, George ;
Collins, Jim ;
Endy, Drew ;
Jacobson, Joseph ;
Keasling, Jay ;
Modrich, Paul ;
Smolke, Christina ;
Weiss, Ron .
SCIENTIFIC AMERICAN, 2006, 294 (06) :44-51
[8]   Homology-Integrated CRISPR-Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae [J].
Bao, Zehua ;
Xiao, Han ;
Lang, Jing ;
Zhang, Lu ;
Xiong, Xiong ;
Sun, Ning ;
Si, Tong ;
Zhao, Huimin .
ACS SYNTHETIC BIOLOGY, 2015, 4 (05) :585-594
[9]   Noise in eukaryotic gene expression [J].
Blake, WJ ;
Kærn, M ;
Cantor, CR ;
Collins, JJ .
NATURE, 2003, 422 (6932) :633-637
[10]  
Brophy JAN, 2014, NAT METHODS, V11, P508, DOI [10.1038/NMETH.2926, 10.1038/nmeth.2926]