Quantitative genotyping of single nucleotide polymorphism by single-molecule multi-color fluorescence resonance energy transfer

被引:3
作者
Koh, Hye Ran
Han, Kyu Young
Jung, Jiwon
Kim, Seong Keun [1 ]
机构
[1] Seoul Natl Univ, Dept Chem, Seoul 151747, South Korea
基金
新加坡国家研究基金会;
关键词
MITOCHONDRIAL-DNA HETEROPLASMY; DRUG RESPONSE; MUTATIONS; DISEASE; QUANTIFICATION; PROBES; LEVEL; SNPS; TOOL; LNA;
D O I
10.1039/c1cc12737c
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
We developed a new single nucleotide polymorphism (SNP) genotyping method based on single-molecule multi-color fluorescence resonance energy transfer (FRET). We demonstrated that this new method uses less than 1 fmol of sample and is also highly quantitative with a detection level of 1% or lower in the minor allele fraction.
引用
收藏
页码:10362 / 10364
页数:3
相关论文
共 24 条
[1]   Detection and quantification of heteroplasmic mutant mitochondrial DNA by real-time amplification refractory mutation system quantitative PCR analysis: A single-step approach [J].
Bai, RK ;
Wong, LJC .
CLINICAL CHEMISTRY, 2004, 50 (06) :996-1001
[2]   Quantification of Heteroplasmic Mitochondrial DNA Mutations for DNA Samples in the Low Picogram Range by Nested Real-time ARMS-qPCR [J].
Biffi, Stefania ;
Bortot, Barbara ;
Carrozzi, Marco ;
Severini, Giovanni Maria .
DIAGNOSTIC MOLECULAR PATHOLOGY, 2011, 20 (02) :117-122
[3]   Alzheimer's brains harbor somatic mtDNA control-region mutations that suppress mitochondrial transcription and replication [J].
Coskun, PE ;
Beal, MF ;
Wallace, DC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (29) :10726-10731
[4]   Pharmacogenomics: The inherited basis for interindividual differences in drug response [J].
Evans, WE ;
Johnson, JA .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2001, 2 :9-39
[5]   DNA-probes for the highly sensitive identification of single nucleotide polymorphism using single-molecule spectroscopy [J].
Friedrich, Achim ;
Hoheisel, Joerg D. ;
Marme, Nicole ;
Knemeyer, Jens-Peter .
FEBS LETTERS, 2007, 581 (08) :1644-1648
[6]  
HOLT IJ, 1990, AM J HUM GENET, V46, P428
[7]   Advances in single-molecule fluorescence methods for molecular biology [J].
Joo, Chirlmin ;
Balci, Hamza ;
Ishitsuka, Yuji ;
Buranachai, Chittanon ;
Ha, Taekjip .
ANNUAL REVIEW OF BIOCHEMISTRY, 2008, 77 :51-76
[8]   SNP genotyping: Technologies and biomedical applications [J].
Kim, Sobin ;
Misra, Ashish .
ANNUAL REVIEW OF BIOMEDICAL ENGINEERING, 2007, 9 :289-320
[9]   Three-color alternating-laser excitation of single molecules: Monitoring multiple interactions and distances [J].
Lee, Nam Ki ;
Kapanidis, Achillefs N. ;
Koh, Hye Ran ;
Korlann, You ;
Ho, Sam On ;
Kim, Younggyu ;
Gassman, Natalie ;
Kim, Seong Keun ;
Weiss, Shimon .
BIOPHYSICAL JOURNAL, 2007, 92 (01) :303-312
[10]   Rapid screening of the entire mitochondrial DNA for low-level heteroplasmic mutations [J].
Meierhofer, D ;
Mayr, JA ;
Ebner, S ;
Sperl, W ;
Kofler, B .
MITOCHONDRION, 2005, 5 (04) :282-296