Adapt Everywhere: Unsupervised Adaptation of Point-Clouds and Entropy Minimization for Multi-Modal Cardiac Image Segmentation

被引:29
作者
Vesal, Sulaiman [1 ]
Gu, Mingxuan [1 ]
Kosti, Ronak [1 ]
Maier, Andreas [1 ]
Ravikumar, Nishant [2 ]
机构
[1] Friedrich Alexander Univ Erlangen Nuremberg, Pattern Recognit Lab, D-91054 Erlangen, Germany
[2] Univ Leeds, Ctr Computat Imaging & Simulat Technol Biomed CIS, Sch Comp, Leeds Inst Cardiovasc & Metab Med LICAMM,Sch Med, Leeds LS2 9JT, W Yorkshire, England
关键词
Image segmentation; Shape; Entropy; Magnetic resonance imaging; Minimization; Adaptation models; Training; Unsupervised domain adaptation; cardiac segmentation; multi-modal segmentation; adversarial learning; point-clouds; entropy minimization; CARDIOVASCULAR MAGNETIC-RESONANCE; DOMAIN ADAPTATION; SYNERGISTIC IMAGE;
D O I
10.1109/TMI.2021.3066683
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Deep learning models are sensitive to domain shift phenomena. A model trained on images from one domain cannot generalise well when tested on images from a different domain, despite capturing similar anatomical structures. It is mainly because the data distribution between the two domains is different. Moreover, creating annotation for every new modality is a tedious and time-consuming task, which also suffers from high inter- and intra- observer variability. Unsupervised domain adaptation (UDA) methods intend to reduce the gap between source and target domains by leveraging source domain labelled data to generate labels for the target domain. However, current state-of-the-art (SOTA) UDA methods demonstrate degraded performance when there is insufficient data in source and target domains. In this paper, we present a novel UDA method for multi-modal cardiac image segmentation. The proposed method is based on adversarial learning and adapts network features between source and target domain in different spaces. The paper introduces an end-to-end framework that integrates: a) entropy minimization, b) output feature space alignment and c) a novel point-cloud shape adaptation based on the latent features learned by the segmentation model. We validated our method on two cardiac datasets by adapting from the annotated source domain, bSSFP-MRI (balanced Steady-State Free Procession-MRI), to the unannotated target domain, LGE-MRI (Late-gadolinium enhance-MRI), for the multi-sequence dataset; and from MRI (source) to CT (target) for the cross-modality dataset. The results highlighted that by enforcing adversarial learning in different parts of the network, the proposed method delivered promising performance, compared to other SOTA methods.
引用
收藏
页码:1838 / 1851
页数:14
相关论文
共 47 条
[11]   PnP-AdaNet: Plug-and-Play Adversarial Domain Adaptation Network at Unpaired Cross-Modality Cardiac Segmentation [J].
Dou, Qi ;
Ouyang, Cheng ;
Chen, Cheng ;
Chen, Hao ;
Glocker, Ben ;
Zhuang, Xiahai ;
Pheng-Ann Heng .
IEEE ACCESS, 2019, 7 :99065-99076
[12]   A Point Set Generation Network for 3D Object Reconstruction from a Single Image [J].
Fan, Haoqiang ;
Su, Hao ;
Guibas, Leonidas .
30TH IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2017), 2017, :2463-2471
[13]   Mechanisms for overestimating acute myocardial infarct size with gadolinium-enhanced cardiovascular magnetic resonance imaging in humans: a quantitative and kinetic study [J].
Hammer-Hansen, Sophia ;
Bandettini, W. Patricia ;
Hsu, Li-Yueh ;
Leung, Steve W. ;
Shanbhag, Sujata ;
Mancini, Christine ;
Greve, Anders M. ;
Kober, Lars ;
Thune, Jens Jakob ;
Kellman, Peter ;
Arai, Andrew E. .
EUROPEAN HEART JOURNAL-CARDIOVASCULAR IMAGING, 2016, 17 (01) :76-84
[14]   Multimodal Unsupervised Image-to-Image Translation [J].
Huang, Xun ;
Liu, Ming-Yu ;
Belongie, Serge ;
Kautz, Jan .
COMPUTER VISION - ECCV 2018, PT III, 2018, 11207 :179-196
[15]   Image-to-Image Translation with Conditional Adversarial Networks [J].
Isola, Phillip ;
Zhu, Jun-Yan ;
Zhou, Tinghui ;
Efros, Alexei A. .
30TH IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2017), 2017, :5967-5976
[16]  
Jung Alexander B., 2020, imgaug
[17]   Unsupervised Domain Adaptation in Brain Lesion Segmentation with Adversarial Networks [J].
Kamnitsas, Konstantinos ;
Baumgartner, Christian ;
Ledig, Christian ;
Newcombe, Virginia ;
Simpson, Joanna ;
Kane, Andrew ;
Menon, David ;
Nori, Aditya ;
Criminisi, Antonio ;
Rueckert, Daniel ;
Glocker, Ben .
INFORMATION PROCESSING IN MEDICAL IMAGING (IPMI 2017), 2017, 10265 :597-609
[18]   Cardiovascular Magnetic Resonance in Patients With Myocardial Infarction [J].
Kim, Han W. ;
Farzaneh-Far, Afshin ;
Kim, Raymond J. .
JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY, 2009, 55 (01) :1-16
[19]   CFEA: Collaborative Feature Ensembling Adaptation for Domain Adaptation in Unsupervised Optic Disc and Cup Segmentation [J].
Liu, Peng ;
Kong, Bin ;
Li, Zhongyu ;
Zhang, Shaoting ;
Fang, Ruogu .
MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2019, PT V, 2019, 11768 :521-529
[20]   Beam-Oriented Digital Predistortion for Hybrid Beamforming Array Utilizing Over-the-Air Diversity Feedbacks [J].
Liu, Xin ;
Chen, Wenhua ;
Chen, Long ;
Feng, Zhenghe .
2019 IEEE MTT-S INTERNATIONAL MICROWAVE SYMPOSIUM (IMS), 2019, :987-990