The mechano-sensing role of the unique SH3 insertion in plakin domains revealed by Molecular Dynamics simulations

被引:25
作者
Daday, Csaba [1 ,2 ]
Kolsek, Katra [2 ]
Graeter, Frauke [1 ,2 ]
机构
[1] Heidelberg Univ, Interdisciplinary Ctr Sci Comp IWR, Mathemat, INF 205, D-69120 Heidelberg, Germany
[2] Heidelberg Inst Theoret Studies, Schloss Wolfsbrunnenweg 35, D-69118 Heidelberg, Germany
来源
SCIENTIFIC REPORTS | 2017年 / 7卷
关键词
FORCE; COOPERATIVITY; INTEGRITY; ADHESION; REPEAT; FAMILY;
D O I
10.1038/s41598-017-11017-2
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The plakin family of proteins, important actors in cross-linking force-bearing structures in the cell, contain a curious SH3 domain insertion in their chain of spectrin repeats (SRs). While SH3 domains are known to mediate protein-protein interactions, here, its canonical binding site is autoinhibited by the preceding SR. Under force, however, this SH3 domain could be released, and possibly launch a signaling cascade. We performed large-scale force-probe molecular dynamics simulations, across two orders of magnitude of loading rates, to test this hypothesis, on two prominent members of the plakin family: desmoplakin and plectin, obligate proteins at desmosomes and hemidesmosomes, respectively. Our simulations show that force unravels the SRs and abolishes the autoinhibition of the SH3 domain, an event well separated from the unfolding of this domain. The SH3 domain is free and fully functional for a significant portion of the unfolding trajectories. The rupture forces required for the two proteins significantly decrease when the SH3 domain is removed, which implies that the SH3 domain also stabilizes this junction. Our results persist across all simulations, and support a force-sensing as well as a stabilizing role of the unique SH3 insertion, putting forward this protein family as a new class of mechano-sensors.
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页数:10
相关论文
共 49 条
  • [1] Mechanistic Basis of Desmosome-Targeted Diseases
    Al-Jassar, Caezar
    Bikker, Hennie
    Overduin, Michael
    Chidgey, Martyn
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2013, 425 (21) : 4006 - 4022
  • [2] Hinged Plakin Domains Provide Specialized Degrees of Articulation in Envoplakin, Periplakin and Desmoplakin
    Al-Jassar, Caezar
    Bernado, Pau
    Chidgey, Martyn
    Overduin, Michael
    [J]. PLOS ONE, 2013, 8 (07):
  • [3] Pathways and intermediates in forced unfolding of spectrin repeats
    Altmann, SM
    Grünberg, RG
    Lenne, PF
    Ylänne, J
    Raae, A
    Herbert, K
    Saraste, M
    Nilges, M
    Hörber, JKH
    [J]. STRUCTURE, 2002, 10 (08) : 1085 - 1096
  • [4] Large-Scale Modelling of the Divergent Spectrin Repeats in Nesprins: Giant Modular Proteins
    Autore, Flavia
    Pfuhl, Mark
    Quan, Xueping
    Williams, Aisling
    Roberts, Roland G.
    Shanahan, Catherine M.
    Fraternali, Franca
    [J]. PLOS ONE, 2013, 8 (05):
  • [5] BELL GI, 1978, SCIENCE, V200, P618, DOI 10.1126/science.347575
  • [6] Berendsen H., 1984, Molecular Liquids, P475
  • [7] Optimized Molecular Dynamics Force Fields Applied to the Helix-Coil Transition of Polypeptides
    Best, Robert B.
    Hummer, Gerhard
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2009, 113 (26) : 9004 - 9015
  • [8] SH3 domain of spectrin participates in the. activation of Rac in specialized calpain-induced integrin signaling complexes
    Bialkowska, K
    Saido, TC
    Fox, JEB
    [J]. JOURNAL OF CELL SCIENCE, 2005, 118 (02) : 381 - 395
  • [9] Plakins, a Versatile Family of Cytolinkers: Roles in Skin Integrity and in Human Diseases
    Bouameur, Jamal-Eddine
    Favre, Bertrand
    Borradori, Luca
    [J]. JOURNAL OF INVESTIGATIVE DERMATOLOGY, 2014, 134 (04) : 885 - 894
  • [10] Canonical sampling through velocity rescaling
    Bussi, Giovanni
    Donadio, Davide
    Parrinello, Michele
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2007, 126 (01)