Error correction algorithms in non-null aspheric testing next generation sequencing data

被引:21
作者
Elloumi, Mourad [1 ]
Ahmad, Mostafa A. [1 ]
Samak, Ahmed H. [1 ]
Al-Sharafi, Ali M. [1 ]
Kihara, Daisuke [2 ,3 ]
Taloba, Ahmed, I [4 ]
机构
[1] Univ Bisha, Coll Comp & Informat Technol, Dept Comp Sci, Bisha, Saudi Arabia
[2] Purdue Univ, Dept Biol Sci, W Lafayette, IN 47907 USA
[3] Purdue Univ, Dept Comp Sci, W Lafayette, IN 47907 USA
[4] Jouf Univ, Coll Sci & Arts Qurayyat, Dept Comp Sci, Sakakah, Saudi Arabia
关键词
Error correction; Non-null aspheric test; Retracing error; Optical path; Laser; Next generation sequencing data; CALIBRATION;
D O I
10.1016/j.aej.2022.03.041
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
Non-null tests are more versatile than null tests and could give fast, generic tests with sufficient performance. The non-null testing methods are able to measure aspheric surfaces with substantial deviations from a reference sphere. The ray will return along a different path and interfere with a separate reference ray in a non-null arrangement. The retrace error occurs because of the significant disparity between the aspheric and the reference. To correct retracing errors and replicate aspheric fabrication imperfections, complex systems modelling and simulations are required. We propose a ray-tracing-based technique for simulating the non-null interferometer that estimates the optical path differences by tracking lasers across the reference and testing paths. An error correction method is used by ray trace analysis to correct the retracing errors in non-null tests of aspheric surfaces. Experiments were conducted to demonstrate the effectiveness of this strategy. The result of the study shows that the proposed system successfully and effectively rectifies the retracing error compared to other practical findings and computer simulation methods. It is more versatile, faster, and provides adequate aspheric assessment performance.(c) 2022 THE AUTHORS. Published by Elsevier BV on behalf of Faculty of Engineering, Alexandria University This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/ licenses/by-nc-nd/4.0/).
引用
收藏
页码:9819 / 9829
页数:11
相关论文
共 38 条
[1]   ALLPATHS: De novo assembly of whole-genome shotgun microreads [J].
Butler, Jonathan ;
MacCallum, Iain ;
Kleber, Michael ;
Shlyakhter, Ilya A. ;
Belmonte, Matthew K. ;
Lander, Eric S. ;
Nusbaum, Chad ;
Jaffe, David B. .
GENOME RESEARCH, 2008, 18 (05) :810-820
[2]   PASS: a program to align short sequences [J].
Campagna, Davide ;
Albiero, Alessandro ;
Bilardi, Alessandra ;
Caniato, Elisa ;
Forcato, Claudio ;
Manavski, Svetlin ;
Vitulo, Nicola ;
Valle, Giorgio .
BIOINFORMATICS, 2009, 25 (07) :967-968
[3]   De novo fragment assembly with short mate-paired reads: Does the read length matter? [J].
Chaisson, Mark J. ;
Brinza, Dumitru ;
Pevzner, Pavel A. .
GENOME RESEARCH, 2009, 19 (02) :336-346
[4]   SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing [J].
Dohm, Juliane C. ;
Lottaz, Claudio ;
Borodina, Tatiana ;
Himmelbauer, Heinz .
GENOME RESEARCH, 2007, 17 (11) :1697-1706
[5]   MOM: maximum oligonucleotide mapping [J].
Eaves, Hugh L. ;
Gao, Yuan .
BIOINFORMATICS, 2009, 25 (07) :969-970
[6]   Iterative reverse optimization procedure for calibration of aspheric wave-front measurements on a nonnull interferometer [J].
Gappinger, RO ;
Greivenkamp, JE .
APPLIED OPTICS, 2004, 43 (27) :5152-5161
[7]   Stability data dependency and errors estimation for a general iteration method [J].
Hussain, Aftab ;
Ali, Danish ;
Karapinar, Erdal .
ALEXANDRIA ENGINEERING JOURNAL, 2021, 60 (01) :703-710
[8]  
Liu D., 2009, Optical Manufacturing and Testing VIII., V7426
[9]   Reverse optimization reconstruction of aspheric figure error in a non-null interferometer [J].
Liu, Dong ;
Shi, Tu ;
Zhang, Lei ;
Yang, Yongying ;
Chong, Shiyao ;
Shen, Yibing .
APPLIED OPTICS, 2014, 53 (24) :5538-5546
[10]   Practical methods for retrace error correction in nonnull aspheric testing [J].
Liu, Dong ;
Yang, Yongying ;
Tian, Chao ;
Luo, Yongjie ;
Wang, Lin .
OPTICS EXPRESS, 2009, 17 (09) :7025-7035