Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers

被引:50
作者
Reeve, Wayne [1 ]
O'Hara, Graham [1 ]
Chain, Patrick [2 ,3 ]
Ardley, Julie [1 ]
Braeu, Lambert [1 ]
Nandesena, Kemanthi [1 ]
Tiwari, Ravi [1 ]
Copeland, Alex [2 ]
Nolan, Matt [2 ]
Han, Cliff [2 ,4 ]
Brettin, Thomas [5 ]
Land, Miriam [2 ,5 ]
Ovchinikova, Galina [2 ]
Ivanova, Natalia [2 ]
Mavromatis, Konstantinos [2 ]
Markowitz, Victor [6 ]
Kyrpides, Nikos [2 ]
Melino, Vanessa [1 ]
Denton, Matthew
Yates, Ron [1 ]
Howieson, John [1 ]
机构
[1] Murdoch Univ, Ctr Rhizobium Studies, Murdoch, WA 6150, Australia
[2] US DOE, Joint Genome Inst, Walnut Creek, CA USA
[3] Lawrence Livermore Natl Lab, Livermore, CA USA
[4] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA
[5] Oak Ridge Natl Lab, Oak Ridge, TN USA
[6] Univ Calif Berkeley, Lawrence Berkeley Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA
关键词
microsymbiont; non-pathogenic; aerobic; Gram-negative rod; root-nodule bacteria; nitrogen fixation; Alphaproteobacteria; BIOVAR TRIFOLII; SELECTION; SPP; NODULATION; SYMBIOSIS; BACTERIA; SYSTEM;
D O I
10.4056/sigs.852027
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Rhizobium leguminosarum bv trifolii is a soil-inhabiting bacterium that has the capacity to be an effective nitrogen fixing microsymbiont of a diverse range of annual Trifolium (clover) species. Strain WSM1325 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from root nodules collected in 1993 from the Greek Island of Serifos. WSM1325 is produced commercially in Australia as an inoculant for a broad range of annual clovers of Mediterranean origin due to its superior attributes of saprophytic competence, nitrogen fixation and acid-tolerance. Here we describe the basic features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence for a microsymbiont of annual clovers. We reveal that its genome size is 7,418,122 bp encoding 7,232 protein-coding genes and 61 RNA-only encoding genes. This multipartite genome contains 6 distinct replicons; a chromosome of size 4,767,043 bp and 5 plasmids of size 828,924 bp, 660,973 bp, 516,088 bp, 350,312 bp and 294,782 bp.
引用
收藏
页码:347 / 356
页数:10
相关论文
共 31 条
[1]  
[Anonymous], INT J SYST EVOL MICR, DOI DOI 10.1099/IJS.0.64108-0
[2]  
[Anonymous], INT J SYST EVOL MICR
[3]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[4]  
Biological Agents, TECHN RUL BIOL AG, P466
[5]   The legume inoculant industry and inoculant quality control in Australia: 1953-2003 [J].
Bullard, GK ;
Roughley, RJ ;
Pulsford, DJ .
AUSTRALIAN JOURNAL OF EXPERIMENTAL AGRICULTURE, 2005, 45 (2-3) :127-140
[6]  
Conn H., 1938, J Bacteriol, V36, P320, DOI DOI 10.1128/JB.36.5.517-520.1938
[7]  
*CTR RHIZ STUD, 2001, ANN REP 2001
[8]  
Dangeard PA, 1926, BOTANISTE, V16, P1
[9]  
FELSENSTEIN J, 1985, EVOLUTION, V39, P783, DOI 10.1111/j.1558-5646.1985.tb00420.x
[10]   The minimum information about a genome sequence (MIGS) specification [J].
Field, Dawn ;
Garrity, George ;
Gray, Tanya ;
Morrison, Norman ;
Selengut, Jeremy ;
Sterk, Peter ;
Tatusova, Tatiana ;
Thomson, Nicholas ;
Allen, Michael J. ;
Angiuoli, Samuel V. ;
Ashburner, Michael ;
Axelrod, Nelson ;
Baldauf, Sandra ;
Ballard, Stuart ;
Boore, Jeffrey ;
Cochrane, Guy ;
Cole, James ;
Dawyndt, Peter ;
De Vos, Paul ;
dePamphilis, Claude ;
Edwards, Robert ;
Faruque, Nadeem ;
Feldman, Robert ;
Gilbert, Jack ;
Gilna, Paul ;
Gloeckner, Frank Oliver ;
Goldstein, Philip ;
Guralnick, Robert ;
Haft, Dan ;
Hancock, David ;
Hermjakob, Henning ;
Hertz-Fowler, Christiane ;
Hugenholtz, Phil ;
Joint, Ian ;
Kagan, Leonid ;
Kane, Matthew ;
Kennedy, Jessie ;
Kowalchuk, George ;
Kottmann, Renzo ;
Kolker, Eugene ;
Kravitz, Saul ;
Kyrpides, Nikos ;
Leebens-Mack, Jim ;
Lewis, Suzanna E. ;
Li, Kelvin ;
Lister, Allyson L. ;
Lord, Phillip ;
Maltsev, Natalia ;
Markowitz, Victor ;
Martiny, Jennifer .
NATURE BIOTECHNOLOGY, 2008, 26 (05) :541-547