Rapid improvement of domestication traits in an orphan crop by genome editing

被引:357
作者
Lemmon, Zachary H. [1 ]
Reem, Nathan T. [2 ]
Dalrymple, Justin [1 ]
Soyk, Sebastian [1 ]
Swartwood, Kerry E. [2 ]
Rodriguez-Leal, Daniel [1 ]
Van Eck, Joyce [2 ,3 ]
Lippman, Zachary B. [1 ,4 ]
机构
[1] Cold Spring Harbor Lab, POB 100, Cold Spring Harbor, NY 11724 USA
[2] Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA
[3] Cornell Univ, Sch Integrat Plant Sci, Plant Breeding & Genet Sect, Ithaca, NY USA
[4] Cold Spring Harbor Lab, Howard Hughes Med Inst, Cold Spring Harbor, NY 11724 USA
基金
美国国家科学基金会;
关键词
TOMATO; TRANSFORMATION; FRUIT; GENE;
D O I
10.1038/s41477-018-0259-x
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Genome editing holds great promise for increasing crop productivity, and there is particular interest in advancing breeding in orphan crops, which are often burdened by undesirable characteristics resembling wild relatives. We developed genomic resources and efficient transformation in the orphan Solanaceae crop 'groundcherry' (Physalis pruinosa) and used clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein-9 nuclease (Cas9) (CRISPR-Cas9) to mutate orthologues of tomato domestication and improvement genes that control plant architecture, flower production and fruit size, thereby improving these major productivity traits. Thus, translating knowledge from model crops enables rapid creation of targeted allelic diversity and novel breeding germplasm in distantly related orphan crops.
引用
收藏
页码:766 / 770
页数:5
相关论文
共 20 条
[1]   Advancing Crop Transformation in the Era of Genome Editing [J].
Altpeter, Fredy ;
Springer, Nathan M. ;
Bartley, Laura E. ;
Blechl, Ann E. ;
Brutnell, Thomas P. ;
Citovsky, Vitaly ;
Conrad, Liza J. ;
Gelvin, Stanton B. ;
Jackson, David P. ;
Kausch, Albert P. ;
Lemaux, Peggy G. ;
Medford, June I. ;
Orozco-Cardenas, Martha L. ;
Tricoli, David M. ;
Van Eck, Joyce ;
Voytas, Daniel F. ;
Walbot, Virginia ;
Wang, Kan ;
Zhang, Zhanyuan J. ;
Stewart, C. Neal, Jr. .
PLANT CELL, 2016, 28 (07) :1510-1520
[2]   Genomics and molecular breeding in lesser explored pulse crops: Current trends and future opportunities [J].
Bohra, Abhishek ;
Jha, Uday Chand ;
Kishor, P. B. Kavi ;
Pandey, Shailesh ;
Singh, Narendra P. .
BIOTECHNOLOGY ADVANCES, 2014, 32 (08) :1410-1428
[3]   Efficient Gene Editing in Tomato in the First Generation Using the Clustered Regularly Interspaced Short Palindromic Repeats/CRISPR-Associated9 System [J].
Brooks, Christopher ;
Nekrasov, Vladimir ;
Lippman, Zachary B. ;
Van Eck, Joyce .
PLANT PHYSIOLOGY, 2014, 166 (03) :1292-1297
[4]   A Multipurpose Toolkit to Enable Advanced Genome Engineering in Plants [J].
Cermak, Tomas ;
Curtin, Shaun J. ;
Gil-Humanes, Javier ;
Cegan, Radim ;
Kono, Thomas J. Y. ;
Konecna, Eva ;
Belanto, Joseph J. ;
Starker, Colby G. ;
Mathre, Jade W. ;
Greenstein, Rebecca L. ;
Voytas, Daniel F. .
PLANT CELL, 2017, 29 (06) :1196-1217
[5]   The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction [J].
Garzon-Martinez, Gina A. ;
Zhu, Z. Iris ;
Landsman, David ;
Barrero, Luz S. ;
Marino-Ramirez, Leonardo .
BMC GENOMICS, 2012, 13
[6]   Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation [J].
Lowe, Keith ;
Wu, Emily ;
Wang, Ning ;
Hoerster, George ;
Hastings, Craig ;
Cho, Myeong-Je ;
Scelonge, Chris ;
Lenderts, Brian ;
Chamberlin, Mark ;
Cushatt, Josh ;
Wang, Lijuan ;
Ryan, Larisa ;
Khan, Tanveer ;
Chow-Yiu, Julia ;
Hua, Wei ;
Yu, Maryanne ;
Banh, Jenny ;
Bao, Zhongmeng ;
Brink, Kent ;
Igo, Elizabeth ;
Rudrappa, Bhojaraja ;
Shamseer, P. M. ;
Bruce, Wes ;
Newman, Lisa ;
Shen, Bo ;
Zheng, Peizhong ;
Bidney, Dennis ;
Falco, Carl ;
Register, Jim ;
Zhao, Zuo-Yu ;
Xu, Deping ;
Jones, Todd ;
Gordon-Kamm, William .
PLANT CELL, 2016, 28 (09) :1998-2015
[7]  
Menzel M. Y., 1951, Proceedings of the American Philosophical Society, V95, P132
[8]   Genetic and molecular regulation of fruit and plant domestication traits in tomato and pepper [J].
Paran, Ilan ;
van der Knaap, Esther .
JOURNAL OF EXPERIMENTAL BOTANY, 2007, 58 (14) :3841-3852
[9]   Meristem maturation and inflorescence architecture - lessons from the Solanaceae [J].
Park, Soon Ju ;
Eshed, Yuval ;
Lippman, Zachary B. .
CURRENT OPINION IN PLANT BIOLOGY, 2014, 17 :70-77
[10]  
Pnueli L, 1998, DEVELOPMENT, V125, P1979