Phase-plane geometries in coupled enzyme assays

被引:5
作者
Eilertsen, Justin [1 ]
Stroberg, Wylie [1 ]
Schnell, Santiago [1 ,2 ]
机构
[1] Univ Michigan, Sch Med, Dept Mol & Integrat Physiol, 7744 MS 2,1137 E Catherine St, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Sch Med, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA
关键词
Enzyme kinetics; Coupled enzyme assays; Michaelis-Menten reactions; Time-dependent slow manifold; Sisyphus manifold; Laelaps manifold; Differential-algebraic equation; Asymptotically autonomous vector field; STEADY-STATE ASSUMPTION; KINETIC-ANALYSIS; VALIDITY; TIME; APPROXIMATION; ACTIVATION; MECHANISM; ERRORS; SYSTEM;
D O I
10.1016/j.mbs.2018.09.008
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The determination of a substrate or enzyme activity by coupling one enzymatic reaction with another easily detectable (indicator) reaction is a common practice in the biochemical sciences. Usually, the kinetics of enzyme reactions is simplified with singular perturbation analysis to derive rate or time course expressions valid under the quasi-steady-state and reactant stationary state assumptions. In this paper, the dynamical behavior of coupled enzyme catalyzed reaction mechanisms is studied by analysis of the phase-plane. We analyze two types of time-dependent slow manifolds - Sisyphus and Laelaps manifolds - that occur in the asymptotically autonomous vector fields that arise from enzyme coupled reactions. Projection onto slow manifolds yields various reduced models, and we present a geometric interpretation of the slow/fast dynamics that occur in the phase-planes of these reactions.
引用
收藏
页码:126 / 135
页数:10
相关论文
共 33 条
  • [11] Kinetic analysis of the mechanism of plasminogen activation by streptokinase
    Fuentes, M. E.
    Valero, E.
    Garcia-Moreno, M.
    Vique, E.
    Varon, R.
    [J]. JOURNAL OF MATHEMATICAL CHEMISTRY, 2007, 42 (04) : 753 - 774
  • [12] KINETIC BEHAVIOR OF A 2-ENZYME MEMBRANE CARRYING OUT A CONSECUTIVE SET OF REACTIONS
    GOLDMAN, R
    KATCHALSKI, E
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 1971, 32 (02) : 243 - +
  • [13] Reactant stationary approximation in enzyme kinetics
    Hanson, Sonya M.
    Schnell, Santiago
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 2008, 112 (37) : 8654 - 8658
  • [14] HART WM, 1970, MOL PHARMACOL, V6, P31
  • [15] THE KINETICS OF ENZYME-SYSTEMS INVOLVING ACTIVATION OF ZYMOGENS
    HAVSTEEN, BH
    GARCIAMORENO, M
    VALERO, E
    MANJABACAS, MC
    VARON, R
    [J]. BULLETIN OF MATHEMATICAL BIOLOGY, 1993, 55 (03) : 561 - 583
  • [16] International Union of Biochemistry, 1983, ARCH BIOCHEM BIOPHYS, V224, P732
  • [17] The application and usefulness of the ratio kcat/KM
    Koshland, DE
    [J]. BIOORGANIC CHEMISTRY, 2002, 30 (03) : 211 - 213
  • [18] MARTORANA F, 1974, Mathematical Biosciences, V21, P77, DOI 10.1016/0025-5564(74)90106-0
  • [19] A KINETIC ANALYSIS OF COUPLED ENZYME ASSAYS
    MCCLURE, WR
    [J]. BIOCHEMISTRY, 1969, 8 (07) : 2782 - &
  • [20] Michaelis L, 1913, BIOCHEM Z, V49, P333