Phase-plane geometries in coupled enzyme assays

被引:5
作者
Eilertsen, Justin [1 ]
Stroberg, Wylie [1 ]
Schnell, Santiago [1 ,2 ]
机构
[1] Univ Michigan, Sch Med, Dept Mol & Integrat Physiol, 7744 MS 2,1137 E Catherine St, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Sch Med, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA
关键词
Enzyme kinetics; Coupled enzyme assays; Michaelis-Menten reactions; Time-dependent slow manifold; Sisyphus manifold; Laelaps manifold; Differential-algebraic equation; Asymptotically autonomous vector field; STEADY-STATE ASSUMPTION; KINETIC-ANALYSIS; VALIDITY; TIME; APPROXIMATION; ACTIVATION; MECHANISM; ERRORS; SYSTEM;
D O I
10.1016/j.mbs.2018.09.008
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
The determination of a substrate or enzyme activity by coupling one enzymatic reaction with another easily detectable (indicator) reaction is a common practice in the biochemical sciences. Usually, the kinetics of enzyme reactions is simplified with singular perturbation analysis to derive rate or time course expressions valid under the quasi-steady-state and reactant stationary state assumptions. In this paper, the dynamical behavior of coupled enzyme catalyzed reaction mechanisms is studied by analysis of the phase-plane. We analyze two types of time-dependent slow manifolds - Sisyphus and Laelaps manifolds - that occur in the asymptotically autonomous vector fields that arise from enzyme coupled reactions. Projection onto slow manifolds yields various reduced models, and we present a geometric interpretation of the slow/fast dynamics that occur in the phase-planes of these reactions.
引用
收藏
页码:126 / 135
页数:10
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