The complete mitochondrial genome of the Argentine red shrimp Pleoticus muelleri (Bate, 1888) (Crustacea, Decapoda, Solenoceridae)

被引：3

作者：

Kim, Nack-Keun ^{[1
]}

Alam, Jobaidul ^{[1
]}

Kim, Gyung Ryul ^{[1
]}

Andriyono, Sapto ^{[1
,2
]}

Park, Hyun ^{[3
]}

Kim, Hyun-Woo ^{[1
,4
]}

机构：

[1] Pukyong Natl Univ, Interdisciplinary Program Biomed Mech & Elect Eng, Busan, South Korea

[2] Univ Airlangga, Fisheries & Marine Fac, Surabaya, Indonesia

[3] Korea Polar Res Inst, Korea Ocean Res & Dev Inst, Incheon, South Korea

[4] Pukyong Natl Univ, Dept Marine Biol, Busan 48513, South Korea

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期

基金：

新加坡国家研究基金会;

关键词：

Next generation sequencing; Pleoticus muelleri; mitochondrial genome; decapod; phylogeny;

D O I：

10.1080/23802359.2018.1511845

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The complete mitochondrial genome of Argentine red shrimp, Pleoticus muelleri (Bate, 1888) was determined using the MiSeq platform. Its mitogenome (16,189 bp) encoded the canonical 13 protein-coding genes, 22 tRNA genes, two rRNA genes. Start codons of all protein-coding genes were ATN except for ATP8, while incomplete stop codons (T-) were identified in six genes including COXI, COXII, COXIII, NAD3, NAD5, and NAD6. The mitogenome of P. muelleri showed highest sequence identity with Parapenaeopsis hardwickii (82%) and Solenocera crassicornis (81%). Phylogenetic analysis showed three shrimps in Solenoceridae including P. muelleri were grouped together from those in Penaeidae, which suggests taxonomic reexamination for those in those family.

引用

页码：1027 / 1028

页数：2

共 8 条

[1] Azevedo V, 2016, ARGENTINE RED SHRIMP
[2] Batista Abner Carvalho, 2011, Nauplius, V19, P135
[3] Bertuche D, 2005, ESTUDIO POTENCIALES
[4] Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Kearse, Matthew
Moir, Richard
Wilson, Amy
Stones-Havas, Steven
Cheung, Matthew
Sturrock, Shane
Buxton, Simon
Cooper, Alex
Markowitz, Sidney
Duran, Chris
Thierer, Tobias
Ashton, Bruce
Meintjes, Peter
Drummond, Alexei
[J]. BIOINFORMATICS, 2012, 28 (12) : 1647 - 1649
[5] Kumar S, 2016, MOL BIOL EVOL, V33, P1870, DOI [10.1093/molbev/msw054, 10.1093/molbev/msv279]
[6] ARWEN:: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
Laslett, Dean
Canback, Bjorn
[J]. BIOINFORMATICS, 2008, 24 (02) : 172 - 175
[7] Sequencing of complete mitochondrial genome of sword prawn Parapenaeopsis hardwickii (Miers) (Crustacea, Decapoda, Penaeidae)
Mao, Zhi-Chao
Liu, Ping
Duan, Ya-Fei
Li, Jian
Chen, Ping
Meng, Xian-Liang
[J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2016, 1 (01): : 259 - 260
[8] Stamatopoulos C, 1993, ATLANTIC FISHERIES 1

← 1 →