The complete chloroplast genome of Chrysanthemum boreale (Asteraceae)

被引:13
作者
Won, So Youn [1 ]
Jung, Jae-A [2 ]
Kim, Jung Sun [1 ]
机构
[1] Rural Dev Adm, Genom Div, Natl Inst Agr Sci, Jeonju, South Korea
[2] Rural Dev Adm, Floriculture Res Div, Natl Inst Hort & Herbal Sci, Wonju, South Korea
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期
关键词
Chrysanthemum; chloroplast genome; PacBio SMRT sequencing; Asteraceae;
D O I
10.1080/23802359.2018.1468225
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Chrysanthemum boreale is a perennial plant in the Asteraceae family that is native to eastern Asia and has both ornamental and herbal uses. Here, we determined the complete chloroplast genome sequence for C. boreale using long-read sequencing. The chloroplast genome was 151,012 bp and consisted of a large single copy (LSC) region (82,817 bp), a small single copy (SSC) region (18,281 bp) and two inverted repeats (IRs) (24,957 bp). It was predicted to contain 131 genes, including 87 protein-coding genes, eight rRNAs and 46 tRNAs. Phylogenetic analysis of chloroplast genomes clustered C. boreale with other Chrysanthemum and Asteraceae species.
引用
收藏
页码:549 / 550
页数:2
相关论文
共 9 条
[1]  
Chin CS, 2016, NAT METHODS, V13, P1050, DOI [10.1038/NMETH.4035, 10.1038/nmeth.4035]
[2]  
Hwang Y.J., 2013, FLOWER RES J, V21, P182, DOI DOI 10.11623/frj.2013.21.4.34
[3]   Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation [J].
Koren, Sergey ;
Walenz, Brian P. ;
Berlin, Konstantin ;
Miller, Jason R. ;
Bergman, Nicholas H. ;
Phillippy, Adam M. .
GENOME RESEARCH, 2017, 27 (05) :722-736
[4]   Versatile and open software for comparing large genomes [J].
Kurtz, S ;
Phillippy, A ;
Delcher, AL ;
Smoot, M ;
Shumway, M ;
Antonescu, C ;
Salzberg, SL .
GENOME BIOLOGY, 2004, 5 (02)
[5]   Macroevolutionary dynamics in the early diversification of Asteraceae [J].
Panero, Jose L. ;
Crozier, Bonnie S. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2016, 99 :116-132
[6]  
Park SangKun Park SangKun, 2014, Plant Breeding and Biotechnology, V2, P184, DOI 10.9787/PBB.2014.2.2.184
[7]   Comparative transcriptome analysis reveals whole-genome duplications and gene selection patterns in cultivated and wild Chrysanthemum species [J].
Won, So Youn ;
Kwon, Soo-Jin ;
Lee, Tae-Ho ;
Jung, Jae-A ;
Kim, Jung Sun ;
Kang, Sang-Ho ;
Sohn, Seong-Han .
PLANT MOLECULAR BIOLOGY, 2017, 95 (4-5) :451-461
[8]   Automatic annotation of organellar genomes with DOGMA [J].
Wyman, SK ;
Jansen, RK ;
Boore, JL .
BIOINFORMATICS, 2004, 20 (17) :3252-3255
[9]  
Zhang JM., 2016, RES REV J BOT SCI, V5, P24