Characterizing semilocal motions in proteins by NMR relaxation studies

被引:52
作者
Fischer, MWF
Zeng, L
Majumdar, A
Zuiderweg, ERP
机构
[1] Univ Michigan, Div Biophys Res, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Dept Phys, Ann Arbor, MI 48109 USA
[3] Univ Michigan, Dept Biol Chem, Ann Arbor, MI 48109 USA
[4] Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA
关键词
D O I
10.1073/pnas.95.14.8016
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The understanding of protein function is incomplete without the study of protein dynamics. NMR spectroscopy is valuable for probing nanosecond and picosecond dynamics via relaxation studies. The use of N-15 relaxation to study backbone dynamics has become virtually standard. Here, we propose to measure the relaxation of additional nuclei on each peptide plane allowing for the observation of anisotropic local motions. This allows the nature of local motions to be characterized in proteins. As an example, semilocal rotational motion was detected for part of a helix of the protein Escherichia coli flavodoxin.
引用
收藏
页码:8016 / 8019
页数:4
相关论文
共 31 条
[11]   Experimental characterization of models for backbone picosecond dynamics in proteins. Quantification of NMR auto- and cross-correlation relaxation mechanisms involving different nuclei of the peptide plane [J].
Fischer, MWF ;
Zeng, L ;
Pang, YX ;
Hu, WD ;
Majumdar, A ;
Zuiderweg, ERP .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (51) :12629-12642
[12]  
HOOVER DH, 1997, PROTEIN SCI, V6, P225
[13]   Determination of phi and chi(1) angles in proteins from C-13-C-13 three-bond J couplings measured by three-dimensional heteronuclear NMR. How planar is the peptide bond? [J].
Hu, JS ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (27) :6360-6368
[14]   FLUCTUATION AND CROSS-CORRELATION ANALYSIS OF PROTEIN MOTIONS OBSERVED IN NANOSECOND MOLECULAR-DYNAMICS SIMULATIONS [J].
HUNENBERGER, PH ;
MARK, AE ;
VANGUNSTEREN, WF .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 252 (04) :492-503
[15]   MOLECULAR-DYNAMICS SIMULATIONS IN BIOLOGY [J].
KARPLUS, M ;
PETSKO, GA .
NATURE, 1990, 347 (6294) :631-639
[16]   BACKBONE DYNAMICS OF PROTEINS AS STUDIED BY N-15 INVERSE DETECTED HETERONUCLEAR NMR-SPECTROSCOPY - APPLICATION TO STAPHYLOCOCCAL NUCLEASE [J].
KAY, LE ;
TORCHIA, DA ;
BAX, A .
BIOCHEMISTRY, 1989, 28 (23) :8972-8979
[17]   MODEL-FREE APPROACH TO THE INTERPRETATION OF NUCLEAR MAGNETIC-RESONANCE RELAXATION IN MACROMOLECULES .2. ANALYSIS OF EXPERIMENTAL RESULTS [J].
LIPARI, G ;
SZABO, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1982, 104 (17) :4559-4570
[18]   MODEL-FREE APPROACH TO THE INTERPRETATION OF NUCLEAR MAGNETIC-RESONANCE RELAXATION IN MACROMOLECULES .1. THEORY AND RANGE OF VALIDITY [J].
LIPARI, G ;
SZABO, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1982, 104 (17) :4546-4559
[19]   BACKBONE DYNAMICS OF ESCHERICHIA-COLI RIBONUCLEASE HI - CORRELATIONS WITH STRUCTURE AND FUNCTION IN AN ACTIVE ENZYME [J].
MANDEL, AM ;
AKKE, M ;
PALMER, AG .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 246 (01) :144-163
[20]   MOLECULAR SWITCH FOR SIGNAL TRANSDUCTION - STRUCTURAL DIFFERENCES BETWEEN ACTIVE AND INACTIVE FORMS OF PROTOONCOGENIC RAS PROTEINS [J].
MILBURN, MV ;
TONG, L ;
DEVOS, AM ;
BRUNGER, A ;
YAMAIZUMI, Z ;
NISHIMURA, S ;
KIM, SH .
SCIENCE, 1990, 247 (4945) :939-945