Gene Expression Signature to Predict Prognosis and Adjuvant Chemosensitivity of Colorectal Cancer Patients

被引:6
作者
Li, Jianxia [1 ]
Zhang, Jianwei [1 ]
Hu, Huabin [1 ]
Cai, Yue [1 ]
Ling, Jiayu [1 ]
Wu, Zehua [1 ]
Deng, Yanhong [1 ]
机构
[1] Sun Yat Sen Univ, Affiliated Hosp 6, Dept Med Oncol, Guangdong Prov Key Lab Colorectal & Pelv Floor Di, Guangzhou 510655, Guangdong, Peoples R China
来源
CANCER MANAGEMENT AND RESEARCH | 2020年 / 12卷
基金
中国国家自然科学基金;
关键词
colorectal cancer (CRC); chemosensitivity; survival; a 15-gene signature; prognosis; risk score; COLON-CANCER; RECTAL-CANCER; STAGE; CARCINOMA; DIFFERENTIATION; ASSOCIATION; INVASION; MUTATION; ANOIKIS; BRAF;
D O I
10.2147/CMAR.S243490
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Purpose: Molecular characteristics using gene-expression profiling can undoubtedly improve the prediction of treatment responses, and ultimately, the clinical outcome of cancer patients. We aimed at developing a genetic signature to improve the prediction of chemosensitivity and prognosis of patients with colorectal cancer (CRC). Patients and Methods: We analyzed microarray data of 32 CRC patients to explore the potential functions and pathways involved in the disease relapse in CRC. Gene expression profiles and clinical follow-up information of GSE39582, GSE17536, and GSE103479 were downloaded from the Gene Expression Omnibus database (GEO) to identify prognostic genes. Eventually, a model of 15-mRNA signature was established, in which its efficacy for predicting chemosensitivity and prognosis was examined. Results: Based on the proposed model of 15-mRNA signature, the test series patients could be classified into high-risk or low-risk subgroup with significantly different overall survival (OS) rate (hazard ratio [HR]=1.48, 95% confidence interval [CI]=1.30-1.70, P <= 0.001). The prognostic value of this 15-mRNA signature was confirmed in another validation series. Further analysis revealed that the prognostic value of this signature was independent of the TNM stage and can predict adjuvant chemosensitivity of patients with early-stage CRC. Conclusion: We identified a novel 15-mRNA signature in patients with CRC, which could be clinically helpful in the prognosis evaluation and the process of selection of patients with early-stage CRC for undergoing adjuvant chemotherapy.
引用
收藏
页码:3301 / 3310
页数:10
相关论文
共 45 条
[11]   Gene expression signature in advanced colorectal cancer patients select drugs and response for the use of leucovorin, fluorouracil, and irinotecan [J].
Del Rio, Maguy ;
Molina, Franck ;
Mollevi, Caroline Bascoul ;
Copois, Virginie ;
Bibeau, Frederic ;
Chalbos, Patrick ;
Bareil, Corinne ;
Kramar, Andrew ;
Salvetat, Nicolas ;
Fraslon, Caroline ;
Conseiller, Emmanuel ;
Granci, Virginie ;
Leblanc, Benjamin ;
Pau, Bernard ;
Martineau, Pierre ;
Ychou, Marc .
JOURNAL OF CLINICAL ONCOLOGY, 2007, 25 (07) :773-780
[12]   Multi-microarray identifies lower AQP9 expression in adjuvant chemotherapy nonresponders with stage III colorectal cancer [J].
Dou, Ruoxu ;
Deng, Yanhong ;
Huang, Lanlan ;
Fu, Shijun ;
Tan, Shuyun ;
Wang, Lei ;
Lian, Lei ;
Fang, Lekun ;
Fan, Xinjuan ;
Jin, Gang ;
Liu, Huanliang ;
Wang, Jianping .
CANCER LETTERS, 2013, 336 (01) :106-113
[13]   The American Joint Committee on Cancer: the 7th Edition of the AJCC Cancer Staging Manual and the Future of TNM [J].
Edge, Stephen B. ;
Compton, Carolyn C. .
ANNALS OF SURGICAL ONCOLOGY, 2010, 17 (06) :1471-1474
[14]   Integrative Genome-Scale DNA Methylation Analysis of a Large and Unselected Cohort Reveals 5 Distinct Subtypes of Colorectal Adenocarcinomas [J].
Fennell, Lochlan ;
Dumenil, Troy ;
Wockner, Leesa ;
Hartel, Gunter ;
Nones, Katia ;
Bond, Catherine ;
Borowsky, Jennifer ;
Liu, Cheng ;
McKeone, Diane ;
Bowdler, Lisa ;
Montgomery, Grant ;
Klein, Kerenaftali ;
Hoffmann, Isabell ;
Patch, Ann-Marie ;
Kazakoff, Stephen ;
Pearson, John ;
Waddell, Nicola ;
Wirapati, Pratyaksha ;
Lochhead, Paul ;
Imamura, Yu ;
Ogino, Shuji ;
Shao, Renfu ;
Tejpar, Sabine ;
Leggett, Barbara ;
Whitehall, Vicki .
CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY, 2019, 8 (02) :269-290
[15]   Identification and Construction of Combinatory Cancer Hallmark-Based Gene Signature Sets to Predict Recurrence and Chemotherapy Benefit in Stage II Colorectal Cancer [J].
Gao, Shanwu ;
Tibiche, Chabane ;
Zou, Jinfeng ;
Zaman, Naif ;
Trifiro, Mark ;
O'Connor-McCourt, Maureen ;
Wang, Edwin .
JAMA ONCOLOGY, 2016, 2 (01) :37-45
[16]   affy -: analysis of Affymetrix GeneChip data at the probe level [J].
Gautier, L ;
Cope, L ;
Bolstad, BM ;
Irizarry, RA .
BIOINFORMATICS, 2004, 20 (03) :307-315
[17]   The consensus molecular subtypes of colorectal cancer [J].
Guinney, Justin ;
Dienstmann, Rodrigo ;
Wang, Xin ;
de Reynies, Aurelien ;
Schlicker, Andreas ;
Soneson, Charlotte ;
Marisa, Laetitia ;
Roepman, Paul ;
Nyamundanda, Gift ;
Angelino, Paolo ;
Bot, Brian M. ;
Morris, Jeffrey S. ;
Simon, Iris M. ;
Gerster, Sarah ;
Fessler, Evelyn ;
Melo, Felipe De Sousa E. ;
Missiaglia, Edoardo ;
Ramay, Hena ;
Barras, David ;
Homicsko, Krisztian ;
Maru, Dipen ;
Manyam, Ganiraju C. ;
Broom, Bradley ;
Boige, Valerie ;
Perez-Villamil, Beatriz ;
Laderas, Ted ;
Salazar, Ramon ;
Gray, Joe W. ;
Hanahan, Douglas ;
Tabernero, Josep ;
Bernards, Rene ;
Friend, Stephen H. ;
Laurent-Puig, Pierre ;
Medema, Jan Paul ;
Sadanandam, Anguraj ;
Wessels, Lodewyk ;
Delorenzi, Mauro ;
Kopetz, Scott ;
Vermeulen, Louis ;
Tejpar, Sabine .
NATURE MEDICINE, 2015, 21 (11) :1350-1356
[18]   Prognostic significance of CXCL5 expression in cancer patients: a meta-analysis [J].
Hu, Binwu ;
Fan, Huiqian ;
Lv, Xiao ;
Chen, Songfeng ;
Shao, Zengwu .
CANCER CELL INTERNATIONAL, 2018, 18
[19]   Association of tumor differentiation and prognosis in patients with rectal cancer undergoing neoadjuvant chemoradiation therapy [J].
Huang, Qunsheng ;
Qin, Huabo ;
Xiao, Jian ;
He, Xiaosheng ;
Xie, Minghao ;
He, Xin ;
Yao, Qiuqiong ;
Lan, Ping ;
Lian, Lei .
GASTROENTEROLOGY REPORT, 2019, 7 (04) :283-290
[20]   Summaries of affymetrix GeneChip probe level data [J].
Irizarry, RA ;
Bolstad, BM ;
Collin, F ;
Cope, LM ;
Hobbs, B ;
Speed, TP .
NUCLEIC ACIDS RESEARCH, 2003, 31 (04) :e15