The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks

被引:194
作者
Gorbalenya, Alexander E. [1 ,2 ]
Krupovic, Mart [3 ]
Mushegian, Arcady [4 ]
Kropinski, Andrew M. [5 ,6 ]
Siddell, Stuart G. [7 ]
Varsani, Arvind [8 ]
Adams, Michael J.
Davison, Andrew J. [9 ]
Dutilh, Bas E. [10 ]
Harrach, Balazs [11 ]
Harrison, Robert L. [12 ]
Junglen, Sandra [13 ,14 ,15 ,16 ]
King, Andrew M. Q. [17 ]
Knowles, Nick J. [17 ]
Lefkowitz, Elliot J. [18 ]
Nibert, Max L. [19 ]
Rubino, Luisa [20 ]
Sabanadzovic, Sead [21 ]
Sanfacon, Helene [22 ]
Simmonds, Peter [23 ]
Walker, Peter J. [24 ]
Zerbini, F. Murilo [25 ]
Kuhn, Jens H. [26 ]
机构
[1] Leiden Univ, Med Ctr, Dept Biomed Data Sci & Microbiol, Leiden, Netherlands
[2] Lomonosov Moscow State Univ, Fac Bioengn & Bioinformat, Moscow, Russia
[3] Inst Pasteur, Archaeal Virol Unit, Paris, France
[4] Natl Sci Fdn, Div Mol & Cellular Biosci, Alexandria, VA USA
[5] Univ Guelph, Dept Food Sci, Guelph, ON, Canada
[6] Univ Guelph, Dept Pathobiol, Guelph, ON, Canada
[7] Univ Bristol, Sch Cellular & Mol Med, Bristol, Avon, England
[8] Arizona State Univ, Biodesign Ctr Fundamental & Appl Microbi, Ctr Evolut & Med, Sch Life Sci, Tempe, AZ USA
[9] Univ Glasgow, Ctr Virus Res, MRC, Glasgow, Lanark, Scotland
[10] Univ Utrecht, Sci Life, Theoret Biol & Bioinformat, Utrecht, Netherlands
[11] Ctr Agr Res, Inst Vet Med Res, Budapest, Hungary
[12] USDA ARS, Invas Insect Biocontrol & Behav Lab, Beltsville, MD USA
[13] Charite Univ Med Berlin, Inst Virol, Berlin, Germany
[14] Free Univ Berlin, Berlin, Germany
[15] Humboldt Univ, Berlin, Germany
[16] Berlin Inst Hlth, Berlin, Germany
[17] Pirbright Inst, Pirbright, England
[18] Univ Alabama Birmingham, Dept Microbiol, Birmingham, AL 35294 USA
[19] Harvard Med Sch, Blavatn Inst, Dept Microbiol, Boston, MA 02115 USA
[20] Natl Res Council Italy, Ist Protez Sostenibile Piante, Bari, Italy
[21] Mississippi State Univ, Dept Biochem Mol Biol Entomol & Plant Pathol, Mississippi State, MS 39762 USA
[22] Agr & Agri Food Canada, Summerland Res & Dev Ctr, Summerland, BC, Canada
[23] Univ Oxford, Nuffield Dept Med, Oxford, England
[24] Univ Queensland, Sch Chem & Mol Biosci, St Lucia, Qld, Australia
[25] Univ Fed Vicosa, Dept Fitopatol BIOAGRO, Vicosa, MG, Brazil
[26] NIAID, Integrated Res Facil Ft Detrick IRF Frederick, NIH, Frederick, MD 21704 USA
基金
英国医学研究理事会;
关键词
ACTIVE-SITE; EVOLUTION;
D O I
10.1038/s41564-020-0709-x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Virus taxonomy emerged as a discipline in the middle of the twentieth century. Traditionally, classification by virus taxonomists has been focussed on the grouping of relatively closely related viruses. However, during the past few years, the International Committee on Taxonomy of Viruses (ICTV) has recognized that the taxonomy it develops can be usefully extended to include the basal evolutionary relationships among distantly related viruses. Consequently, the ICTV has changed its Code to allow a 15-rank classification hierarchy that closely aligns with the Linnaean taxonomic system and may accommodate the entire spectrum of genetic divergence in the virosphere. The current taxonomies of three human pathogens, Ebola virus, severe acute respiratory syndrome coronavirus and herpes simplex virus 1 are used to illustrate the impact of the expanded rank structure. This new rank hierarchy of virus taxonomy will stimulate further research on virus origins and evolution, and vice versa, and could promote crosstalk with the taxonomies of cellular organisms. Here, the International Committee on Taxonomy of Viruses describe a new, expanded virus classification scheme with 15 ranks that closely aligns with the Linnaean taxonomic system and better encompasses viral diversity.
引用
收藏
页码:668 / 674
页数:7
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