Single whole genome sequencing analysis blazes the trail for precision medicine

被引:1
作者
Napoli, Giulia C. [1 ]
Chau, Cindy H. [1 ]
Figg, William D. [1 ]
机构
[1] NCI, Mol Pharmacol Sect, Genitourinary Malignancies Branch, Ctr Canc Res,NIH, 9000 Rockville Pike,Bldg 10 Room 5A03, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
WGS; driver gene mutations; precision oncology; targeted therapies; biomarkers;
D O I
10.1080/15384047.2022.2033058
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
As precision oncology evolves toward developing more targeted therapies, sequencing has moved to the forefront of treatment decision-making. Whole genome sequencing (WGS) has emerged as a technology capable of identifying candidates for rare and targeted treatments. Yet, because the tumor is constantly evolving during relapse and therapy resistance, the frequency with which WGS should be performed to identify potential new therapies for progressing patients remains unknown. A recent study in Nature Medicine by Van de Haar et al. observed a remarkably stable driver gene mutational profile among 250 biopsy pairs from 231 patients undergoing standard of care treatments during the biopsy interval. Their findings suggest that the actionable metastatic cancer genome is relatively stable over time and that a single WGS provides a complete view of the treatment opportunities available to most metastatic cancer patients.
引用
收藏
页码:134 / 135
页数:2
相关论文
共 12 条
[1]   Metastatic Castration-Resistant Prostate Cancer Remains Dependent on Oncogenic Drivers Found in Primary Tumors [J].
Einstein, David J. ;
Arai, Seiji ;
Calagua, Carla ;
Xie, Fang ;
Voznesensky, Olga ;
Capaldo, Brian J. ;
Luffman, Christina ;
Hecht, Jonathan L. ;
Balk, Steven P. ;
Sowalsky, Adam G. ;
Russo, Joshua W. .
JCO PRECISION ONCOLOGY, 2021, 5 :1514-1522
[2]   Molecular Landscape and Actionable Alterations in a Genomically Guided Cancer Clinical Trial: National Cancer Institute Molecular Analysis for Therapy Choice (NCI-MATCH) [J].
Flaherty, Keith T. ;
Gray, Robert J. ;
Chen, Alice P. ;
Li, Shuli ;
McShane, Lisa M. ;
Patton, David ;
Hamilton, Stanley R. ;
Williams, P. Mickey ;
Iafrate, A. John ;
Sklar, Jeffrey ;
Mitchell, Edith P. ;
Harris, Lyndsay N. ;
Takebe, Naoko ;
Sims, David J. ;
Coffey, Brent ;
Fu, Tony ;
Routbort, Mark ;
Zwiebel, James A. ;
Rubinstein, Larry V. ;
Little, Richard F. ;
Arteaga, Carlos L. ;
Comis, Robert ;
Abrams, Jeffrey S. ;
O'Dwyer, Peter J. ;
Conley, Barbara A. .
JOURNAL OF CLINICAL ONCOLOGY, 2020, 38 (33) :3883-3894
[3]   Somatic evolutionary timings of driver mutations [J].
Gomez, Karen ;
Miura, Sayaka ;
Huuki, Louise A. ;
Spell, Brianna S. ;
Townsend, Jeffrey P. ;
Kumar, Sudhir .
BMC CANCER, 2018, 18
[4]   Comparison of solid tissue sequencing and liquid biopsy accuracy in identification of clinically relevant gene mutations and rearrangements in lung adenocarcinomas [J].
Lin, Lawrence Hsu ;
Allison, Douglas H. R. ;
Feng, Yang ;
Jour, George ;
Park, Kyung ;
Zhou, Fang ;
Moreira, Andre L. ;
Shen, Guomiao ;
Feng, Xiaojun ;
Sabari, Joshua ;
Velcheti, Vamsidhar ;
Snuderl, Matija ;
Cotzia, Paolo .
MODERN PATHOLOGY, 2021, 34 (12) :2168-2174
[5]   Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics [J].
Longo, Sophia K. ;
Guo, Margaret G. ;
Ji, Andrew L. ;
Khavari, Paul A. .
NATURE REVIEWS GENETICS, 2021, 22 (10) :627-644
[6]   Plasma-Based Genotyping in Advanced Solid Tumors: A Comprehensive Review [J].
Makarem, Maisam ;
Garcia-Pardo, Miguel ;
Leighl, Natasha B. .
CANCERS, 2021, 13 (21)
[7]   Clonal Heterogeneity and Tumor Evolution: Past, Present, and the Future [J].
McGranahan, Nicholas ;
Swanton, Charles .
CELL, 2017, 168 (04) :613-628
[8]   The mutational footprints of cancer therapies [J].
Pich, Oriol ;
Muinos, Ferran ;
Lolkema, Martijn Paul ;
Steeghs, Neeltje ;
Gonzalez-Perez, Abel ;
Lopez-Bigas, Nuria .
NATURE GENETICS, 2019, 51 (12) :1732-+
[9]   Single-cell lineage tracing of metastatic cancer reveals selection of hybrid EMT states [J].
Simeonov, Kamen P. ;
Byrns, China N. ;
Clark, Megan L. ;
Norgard, Robert J. ;
Martin, Beth ;
Stanger, Ben Z. ;
Shendure, Jay ;
McKenna, Aaron ;
Lengner, Christopher J. .
CANCER CELL, 2021, 39 (08) :1150-+
[10]   Molecular profiling of advanced solid tumors and patient outcomes with genotype-matched clinical trials: the Princess Margaret IMPACT/COMPACT trial [J].
Stockley, Tracy L. ;
Oza, Amit M. ;
Berman, Hal K. ;
Leighl, Natasha B. ;
Knox, Jennifer J. ;
Shepherd, Frances A. ;
Chen, Eric X. ;
Krzyzanowska, Monika K. ;
Dhani, Neesha ;
Joshua, Anthony M. ;
Tsao, Ming-Sound ;
Serra, Stefano ;
Clarke, Blaise ;
Roehrl, Michael H. ;
Zhang, Tong ;
Sukhai, Mahadeo A. ;
Califaretti, Nadia ;
Trinkaus, Mateya ;
Shaw, Patricia ;
van der Kwast, Theodorus ;
Wang, Lisa ;
Virtanen, Carl ;
Kim, Raymond H. ;
Razak, Albiruni R. A. ;
Hansen, Aaron R. ;
Yu, Celeste ;
Pugh, Trevor J. ;
Kamel-Reid, Suzanne ;
Siu, Lillian L. ;
Bedard, Philippe L. .
GENOME MEDICINE, 2016, 8