The complete chloroplast genome of Lilium pumilum Redoute (Liliaceae)

被引：1
作者：
Qi, Xiangying [1 ]
Wang, Kaiqi [1 ]
Yang, Liping [2 ]
Deng, Zhenshan [1 ]
Sun, Zhihong [1 ]
机构：
[1] Yanan Univ, Shaanxi Engn & Technol Res Ctr Conversat & Utiliz, Yanan 716000, Shaanxi, Peoples R China
[2] Yangtze Normal Univ, Sch Adv Agr & Bioengn, Chongqing, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 02期
基金：
中国国家自然科学基金;
关键词：
Lilium pumilum Redoute; chloroplast genome; phylogenetic analysis;
D O I：
10.1080/23802359.2020.1735279
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Lilium pumilum Redoute, belonging to Liliaceae, has important ornamental and medicinal values. In the present study, we sequenced the complete chloroplast genome of L. pumilum by Illumina Hiseq X Ten and PacBio RS technologies firstly. The genome size of L. pumilum was 152,591 bp, with typical quadripartite circle structure: one large single copy (LSC, 82,013 bp), one small single copy (SSC, 17,594 bp), and a pair of inverted repeat regions (IRs, 26,492 bp). The overall GC content was 37.02%. The genome contained 130 genes, including 84 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that 23 Lilium species grouped into two branches, and L. pumilum was related to L. amabile and L. callosum. The present study could afford crucial genetic information for further researches on the genus and related genera.
引用
收藏
页码：1349 / 1350
页数：2
相关论文
共 50 条
[41]   The complete chloroplast genome of Cupressus chengiana [J].
Zi-long Zhang ;
Li-ying Ma ;
Hongbin Yao ;
Xin Yang ;
Ji-huai Luo ;
Xue Gong ;
Shuo-yue Wei ;
Quan-fang Li ;
Wei Wang ;
Hong-bin Sun .
Conservation Genetics Resources, 2017, 9 :347-349
[42]   The complete chloroplast genome of Keteleeria evelyniana [J].
Li, Yaqi ;
Li, Jiangfei ;
Wang, Dan ;
Zhu, Yajin ;
Wang, Dawei ;
Xu, Yulan ;
Cai, Nianhui .
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (09) :2650-2651
[43]   The complete chloroplast genome of Pinus densata [J].
Li, Yaqi ;
Sun, Jiwei ;
Ci, Xiaotong ;
Li, Jiangfei ;
Wang, Dawei ;
Xu, Yulan ;
Cai, Nianhui .
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (11) :3140-3141
[44]   The complete chloroplast genome of Allium fistulosum [J].
Yusupov, Ziyoviddin ;
Deng, Tao ;
Liu, Changkun ;
Lin, Nan ;
Tojibaev, Komiljon ;
Sun, Hang .
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :489-490
[45]   The complete chloroplast genome of Cupressus chengiana [J].
Zhang, Zi-long ;
Ma, Li-ying ;
Yao, Hongbin ;
Yang, Xin ;
Luo, Ji-huai ;
Gong, Xue ;
Wei, Shuo-yue ;
Li, Quan-fang ;
Wang, Wei ;
Sun, Hong-bin .
CONSERVATION GENETICS RESOURCES, 2017, 9 (03) :347-349
[46]   The Complete Chloroplast Genome of Colpomenia sinuosa [J].
Wang, X. ;
Song, L. ;
Fu, Y. ;
He, Y. Y. ;
Qu, Ch. ;
Miao, J. ;
Xie, W. .
RUSSIAN JOURNAL OF GENETICS, 2025, 61 (01) :129-132
[47]   The complete chloroplast genome of Pittosporum brevicalyx [J].
Xiao, Mingkun ;
Xiong, Xiankun ;
Shen, Shaobin ;
Song, Jiming ;
Yi, Huaifeng ;
Jiang, Tailing ;
Luo, Xin ;
Nie, Kaihong ;
Zhang, Linhui .
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (07) :1919-1920
[48]   The complete chloroplast genome ofMusa beccarii [J].
Feng, Huimin ;
Chen, You ;
Xu, Xiaoxiong ;
Luo, Hongli ;
Wu, Yaoting ;
He, Chaozu .
MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03) :2384-2385
[49]   The complete chloroplast genome of Androsace mariae [J].
Guo, Yupeng ;
Ma, Rui ;
Xie, Jun ;
Liu, Qiujuan ;
Zhu, Ye ;
Yang, Wenjing ;
Gao, Lina ;
Ma, Yanjun .
MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (02) :376-377
[50]   The complete chloroplast genome of Rosa berberifolia [J].
Zhang, Shu-Dong ;
Zhang, Chao ;
Ling, Li-Zhen .
MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01) :1741-1742
12345