Dynamics of in silico leukocyte rolling, activation, and adhesion

被引:32
作者
Tang, Jonathan
Ley, Klaus F.
Hunt, C. Anthony [1 ]
机构
[1] Univ Calif Berkeley, UCSF UCB Joint Grad Grp Bio Engn, Berkeley, CA 94720 USA
[2] Univ Virginia, Dept Biomed Engn, Robert M Berne Cardiovasc Res Ctr, Charlottesville, VA USA
[3] Univ Virginia, Dept Mol Physiol, Robert M Berne Cardiovasc Res Ctr, Charlottesville, VA USA
[4] Univ Virginia, Dept Biol Phys, Robert M Berne Cardiovasc Res Ctr, Charlottesville, VA USA
[5] Univ Calif San Francisco, Dept Biopharmaceut Sci, Biosyst Grp, San Francisco, CA USA
来源
BMC SYSTEMS BIOLOGY | 2007年 / 1卷
关键词
D O I
10.1186/1752-0509-1-14
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: We present a multilevel, agent based, in silico model that represents the dynamics of rolling, activation, and adhesion of individual leukocytes in vitro. Object-oriented software components were designed, verified, plugged together, and then operated in ways that represent the molecular and cellular mechanisms believed responsible for leukocyte rolling and adhesion. The result is an in silico analogue of an experimental in vitro system. The experimentally measured, phenotypic attributes of the analogue were compared and contrasted to those of leukocytes in vitro from three different experimental conditions. Results: The individual in silico dynamics of "rolling" on simulated P-selectin, and separately on simulated VCAM-1, were an acceptable match to individual in vitro distance-time and velocity-time measurements. The analogues are also able to represent the transition from rolling to adhesion on P-selectin and VCAM-1 in the presence of GRO-alpha chemokine. The individual in silico and in vitro behavioral similarities translated successfully to population level measures. These behavioral similarities were enabled in part by subdividing the functionality of the analogue's surface into 600 independent, "cell"- controlled, equally capable modules of comparable functionality. Conclusion: The overlap in phenotypic attributes of our analogue with those of leukocytes in vitro confirm the considerable potential of our model for studying the key events that determine the behavioral outcome of individual leukocytes during rolling, activation, and adhesion. Our results provide an important foundation and framework for future in silico research into plausible causal links between well-documented, subcellular molecular level events and the variety of systemic phenotypic attributes that distinguish normal leukocyte adhesion from abnormal disease-associated adhesion.
引用
收藏
页数:25
相关论文
共 57 条
  • [1] ALBER M, 2002, MATH SYSTEMS THEOR B
  • [2] The kinetics of L-selectin tethers and the mechanics of selectin-mediated rolling
    Alon, R
    Chen, SQ
    Puri, KD
    Finger, EB
    Springer, TA
    [J]. JOURNAL OF CELL BIOLOGY, 1997, 138 (05) : 1169 - 1180
  • [3] THE INTEGRIN VLA-4 SUPPORTS TETHERING AND ROLLING IN FLOW ON VCAM-1
    ALON, R
    KASSNER, PD
    CARR, MW
    FINGER, EB
    HEMLER, ME
    SPRINGER, TA
    [J]. JOURNAL OF CELL BIOLOGY, 1995, 128 (06) : 1243 - 1253
  • [4] The state diagram for cell adhesion mediated by two receptors
    Bhatia, SK
    King, MR
    Hammer, DA
    [J]. BIOPHYSICAL JOURNAL, 2003, 84 (04) : 2671 - 2690
  • [5] Brenner S, 1998, CIBA F SYMP, V213, P106
  • [6] Effect of microvillus deformability on leukocyte adhesion explored using adhesive dynamics simulations
    Caputo, KE
    Hammer, DA
    [J]. BIOPHYSICAL JOURNAL, 2005, 89 (01) : 187 - 200
  • [7] The state diagram for cell adhesion under flow: Leukocyte rolling and firm adhesion
    Chang, KC
    Tees, DFJ
    Hammer, DA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (21) : 11262 - 11267
  • [8] An automatic braking system that stabilizes leukocyte rolling by an increase in selectin bond number with shear
    Chen, SQ
    Springer, TA
    [J]. JOURNAL OF CELL BIOLOGY, 1999, 144 (01) : 185 - 200
  • [9] Real time analysis of the affinity regulation of α4-integrin -: The physiologically activated receptor is intermediate in affinity between resting and Mn2+ or antibody activation
    Chigaev, A
    Blenc, AM
    Braaten, JV
    Kumaraswamy, N
    Kepley, CL
    Andrews, RP
    Oliver, JM
    Edwards, BS
    Prossnitz, ER
    Larson, RS
    Sklar, LA
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2001, 276 (52) : 48670 - 48678
  • [10] Constantin G, 2005, LEUKOCYTE TRAFFICKING: MOLECULAR MECHANISMS, THERAPEUTIC TARGETS, AND METHODS, P68, DOI 10.1002/352760779X.ch4