Computational Models in Non-Coding RNA and Human Disease

被引：10

作者：

Chen, Xing ^{[1
]}

Wang, Chun-Chun ^{[1
]}

Guan, Na-Na ^{[2
]}

机构：

[1] China Univ Min & Technol, Sch Informat & Control Engn, Xuzhou 221116, Jiangsu, Peoples R China

[2] Guizhou Univ Finance & Econ, Coll Big Data Stat, Guiyang 550025, Peoples R China

来源：

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES | 2020年 / 21卷 / 05期

基金：

中国国家自然科学基金;

关键词：

COMPLEX DISEASES; MICRORNAS; REGIONS; CANCER;

D O I：

10.3390/ijms21051557

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页数：5

共 46 条

[1] Annotating non-coding regions of the genome [J].

Alexander, Roger P. ;

Fang, Gang ;

Rozowsky, Joel ;

Snyder, Michael ;

Gerstein, Mark B. .

NATURE REVIEWS GENETICS, 2010, 11 (08) :559-571

[2] Non-coding RNA networks in cancer [J].

Anastasiadou, Eleni ;

Jacob, Leni S. ;

Slack, Frank J. .

NATURE REVIEWS CANCER, 2018, 18 (01) :5-18

[3] Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].

Birney, Ewan ;

Stamatoyannopoulos, John A. ;

Dutta, Anindya ;

Guigo, Roderic ;

Gingeras, Thomas R. ;

Margulies, Elliott H. ;

Weng, Zhiping ;

Snyder, Michael ;

Dermitzakis, Emmanouil T. ;

Stamatoyannopoulos, John A. ;

Thurman, Robert E. ;

Kuehn, Michael S. ;

Taylor, Christopher M. ;

Neph, Shane ;

Koch, Christoph M. ;

Asthana, Saurabh ;

Malhotra, Ankit ;

Adzhubei, Ivan ;

Greenbaum, Jason A. ;

Andrews, Robert M. ;

Flicek, Paul ;

Boyle, Patrick J. ;

Cao, Hua ;

Carter, Nigel P. ;

Clelland, Gayle K. ;

Davis, Sean ;

Day, Nathan ;

Dhami, Pawandeep ;

Dillon, Shane C. ;

Dorschner, Michael O. ;

Fiegler, Heike ;

Giresi, Paul G. ;

Goldy, Jeff ;

Hawrylycz, Michael ;

Haydock, Andrew ;

Humbert, Richard ;

James, Keith D. ;

Johnson, Brett E. ;

Johnson, Ericka M. ;

Frum, Tristan T. ;

Rosenzweig, Elizabeth R. ;

Karnani, Neerja ;

Lee, Kirsten ;

Lefebvre, Gregory C. ;

Navas, Patrick A. ;

Neri, Fidencio ;

Parker, Stephen C. J. ;

Sabo, Peter J. ;

Sandstrom, Richard ;

Shafer, Anthony .

NATURE, 2007, 447 (7146) :799-816

[4] Tissue Expression Difference between mRNAs and lncRNAs [J].

Chen, Lei ;

Zhang, Yu-Hang ;

Pan, Xiaoyong ;

Liu, Min ;

Wang, Shaopeng ;

Huang, Tao ;

Cai, Yu-Dong .

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 19 (11)

[5] NCMCMDA: miRNA-disease association prediction through neighborhood constraint matrix completion [J].

Chen, Xing ;

Sun, Lian-Gang ;

Zhao, Yan .

BRIEFINGS IN BIOINFORMATICS, 2021, 22 (01) :485-496

[6] Ensemble of decision tree reveals potential miRNA-disease associations [J].

Chen, Xing ;

Zhu, Chi-Chi ;

Yin, Jun .

PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (07)

[7] MicroRNAs and complex diseases: from experimental results to computational models [J].

Chen, Xing ;

Xie, Di ;

Zhao, Qi ;

You, Zhu-Hong .

BRIEFINGS IN BIOINFORMATICS, 2019, 20 (02) :515-539

[8] Long non-coding RNAs and complex diseases: from experimental results to computational models [J].

Chen, Xing ;

Yan, Chenggang Clarence ;

Zhang, Xu ;

You, Zhu-Hong .

BRIEFINGS IN BIOINFORMATICS, 2017, 18 (04) :558-576

[9] MicroRNA-small molecule association identification: from experimental results to computational models [J].

Chen, Xing ;

Guan, Na-Na ;

Sun, Ya-Zhou ;

Li, Jian-Qiang ;

Qu, Jia .

BRIEFINGS IN BIOINFORMATICS, 2020, 21 (01) :47-61

[10] MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction [J].

Chen, Xing ;

Yin, Jun ;

Qu, Jia ;

Huang, Li .

PLOS COMPUTATIONAL BIOLOGY, 2018, 14 (08)

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