Identification of Daboia siamensis venome using integrated multi-omics data

被引:7
作者
Saethang, Thammakorn [1 ]
Somparn, Poorichaya [2 ,3 ]
Payungporn, Sunchai [4 ]
Sriswasdi, Sira [5 ,6 ]
Yee, Khin Than [7 ]
Hodge, Kenneth [2 ]
Knepper, Mark A. [8 ]
Chanhome, Lawan [9 ]
Khow, Orawan [9 ]
Chaiyabutr, Narongsak [9 ]
Sitprija, Visith [9 ]
Pisitkun, Trairak [2 ,8 ]
机构
[1] Kasetsart Univ, Dept Comp Sci, Fac Sci, Bangkok 10900, Thailand
[2] Chulalongkorn Univ, Ctr Excellence Syst Biol, Fac Med, Bangkok 10330, Thailand
[3] Chulalongkorn Univ, Dept Microbiol, Fac Med, Translat Res Inflammat & Immunol Res Unit TRIRU, Bangkok 10330, Thailand
[4] Chulalongkorn Univ, Res Unit Syst Microbiol, Fac Med, Bangkok 10330, Thailand
[5] Chulalongkorn Univ, Ctr Excellence Computat Mol Biol, Fac Med, Bangkok 10330, Thailand
[6] Chulalongkorn Univ, Res Affairs, Fac Med, Bangkok 10330, Thailand
[7] Minist Hlth, Chem Toxicol Res Div, Dept Med Res, Yangon 11191, Myanmar
[8] NHLBI, Epithelial Syst Biol Lab, NIH, Bldg 10, Bethesda, MD 20892 USA
[9] Thai Red Cross Soc, Queen Saovabha Mem Inst, Bangkok 10330, Thailand
基金
美国国家卫生研究院;
关键词
GENOME REVEALS; RUSSELII VENOM; SNAKE; EVOLUTION; SEQUENCE; ADAPTATION; TOXINS; GENES; INDIA;
D O I
10.1038/s41598-022-17300-1
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Snakebite, classified by World Health Organization as a neglected tropical disease, causes more than 100,000 deaths and 2 million injuries per year. Currently, available antivenoms do not bind with strong specificity to target toxins, which means that severe complications can still occur despite treatment. Moreover, the cost of antivenom is expensive. Knowledge of venom compositions is fundamental for producing a specific antivenom that has high effectiveness, low side effects, and ease of manufacture. With advances in mass spectrometry techniques, venom proteomes can now be analyzed in great depth at high efficiency. However, these techniques require genomic and transcriptomic data for interpreting mass spectrometry data. This study aims to establish and incorporate genomics, transcriptomics, and proteomics data to study venomics of a venomous snake, Daboia siamensis. Multiple proteins that have not been reported as venom components of this snake such as hyaluronidase-1, phospholipase B, and waprin were discovered. Thus, multi-omics data are advantageous for venomics studies. These findings will be valuable not only for antivenom production but also for the development of novel therapeutics.
引用
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页数:13
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