Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001

被引：4

作者：

Chen, Jingxuan ^{[1
]}

Garfinkel, David J. ^{[2
,3
]}

Bergman, Casey M. ^{[1
,2
]}

机构：

[1] Univ Georgia, Inst Bioinformat, Athens, GA 30602 USA

[2] Univ Georgia, Dept Genet, Athens, GA 30602 USA

[3] Univ Georgia, Dept Biochem & Mol Biol, Athens, GA 30602 USA

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2022年 / 11卷 / 01期

关键词：

EVOLUTIONARY RELATIONSHIPS; RETROTRANSPOSONS; SEQUENCES; BAYANUS;

D O I：

10.1128/mra.00972-21

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Here, we report a long-read genome assembly for Saccharomyces uvarum strain CBS 7001 based on PacBio whole-genome shotgun sequence data. Our assembly provides an improved reference genome for an important yeast in the Saccharomyces sensu stricto clade.

引用

页数：3

共 23 条

[1] A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum [J].

Almeida, Pedro ;

Goncalves, Carla ;

Teixeira, Sara ;

Libkind, Diego ;

Bontrager, Martin ;

Masneuf-Pomarede, Isabelle ;

Albertin, Warren ;

Durrens, Pascal ;

Sherman, David James ;

Marullo, Philippe ;

Hittinger, Chris Todd ;

Goncalves, Paula ;

Sampaio, Jose Paulo .

NATURE COMMUNICATIONS, 2014, 5

[2] RaGOO: fast and accurate reference-guided scaffolding of draft genomes [J].

Alonge, Michael ;

Soyk, Sebastian ;

Ramakrishnan, Srividya ;

Wang, Xingang ;

Goodwin, Sara ;

Sedlazeck, Fritz J. ;

Lippman, Zachary B. ;

Schatz, Michael C. .

GENOME BIOLOGY, 2019, 20 (01)

[3] Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus [J].

Bergman, Casey M. .

MOBILE DNA, 2018, 9

[4] Genomic Exploration of the Hemiascomycetous Yeasts:: 5.: Saccharomyces bayanus var. uvarum [J].

Bon, E ;

Neuvéglise, C ;

Casaregola, S ;

Artiguenave, F ;

Wincker, P ;

Aigle, M ;

Durrens, P .

FEBS LETTERS, 2000, 487 (01) :37-41

[5]

Bushnell B, 2014, LAWRENCE BERKELEY NA

[6]

Chin CS, 2013, NAT METHODS, V10, P563, DOI [10.1038/NMETH.2474, 10.1038/nmeth.2474]

[7] Finding functional features in Saccharomyces genomes by phylogenetic footprinting [J].

Cliften, P ;

Sudarsanam, P ;

Desikan, A ;

Fulton, L ;

Fulton, B ;

Majors, J ;

Waterston, R ;

Cohen, BA ;

Johnston, M .

SCIENCE, 2003, 301 (5629) :71-76

[8] Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination [J].

Czaja, Wioletta ;

Bensasson, Douda ;

Ahn, Hyo Won ;

Garfinkel, David J. ;

Bergman, Casey M. .

PLOS GENETICS, 2020, 16 (02)

[9] Saccharomyces eubayanus and Saccharomyces uvarum associated with the fermentation of Araucaria araucana seeds in Patagonia [J].

Eugenia Rodriguez, M. ;

Perez-Traves, Laura ;

Sangorrin, Marcela P. ;

Barrio, Eladio ;

Lopes, Christian A. .

FEMS YEAST RESEARCH, 2014, 14 (06) :948-965

[10] Sequencing and comparison of yeast species to identify genes and regulatory elements [J].

Kellis, M ;

Patterson, N ;

Endrizzi, M ;

Birren, B ;

Lander, ES .

NATURE, 2003, 423 (6937) :241-254

← 1 2 3 →