The complete mitochondrial genome of Lasiopodomys brandtii

被引:2
作者
Tian, Xiangyu [1 ]
Gu, Shiming [1 ]
Pan, Dan [1 ]
Shi, Luye [1 ]
Wang, Zhenlong [1 ]
机构
[1] Zhengzhou Univ, Sch Life Sci, Zhengzhou, Henan, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 01期
基金
中国国家自然科学基金;
关键词
Complete mitochondrial genome; Lasiopodomys brandtii; phylogenetic tree; RODENTIA;
D O I
10.1080/23802359.2019.1703567
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
In this study, the complete mitochondrial (mt) genome sequence of Lasiopodomys brandtii was determined using Illumina NovaSeq platform. The assembled genome was 16,557 bp in length and included 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. The total nucleotide composition frequencies present clearly the A-T skew (59.5%), which mostly in D-loop and PCGs regions. Whole mt genome phylogenetic analysis revealed a closely related among Lasiopodomys, Proedromys, and Microtus with high support. It would provide further evolutionary research for the subfamily Arvicolinae.
引用
收藏
页码:364 / 365
页数:2
相关论文
共 9 条
  • [1] Supraspecies Relationships in the Subfamily Arvicolinae (Rodentia, Cricetidae): An Unexpected Result of Nuclear Gene Analysis
    Abramson, N. I.
    Lebedev, V. S.
    Tesakov, A. S.
    Bannikova, A. A.
    [J]. MOLECULAR BIOLOGY, 2009, 43 (05) : 834 - 846
  • [2] Lasiopodomys brandti in Pleistocene of Transbaiklia and adjacent territories: Distribution area, evolutionary development in context of global and regional events
    Alexeeva, Nadezhda
    Erbajeva, Margarita
    Khenzykhenova, Fedora
    [J]. QUATERNARY INTERNATIONAL, 2015, 355 : 11 - 17
  • [3] Molecular phylogeny and evolution of the Asian lineage of vole genus Microtus (Rodentia: Arvicolinae) inferred from mitochondrial cytochrome b sequence
    Bannikova, Anna A.
    Lebedev, Vladimir S.
    Lissovsky, Andrey A.
    Matrosova, Vera
    Abramson, Natalia I.
    Obolenskaya, Ekaterina V.
    Tesakov, Alexey S.
    [J]. BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, 2010, 99 (03) : 595 - 613
  • [4] NOVOPlasty: de novo assembly of organelle genomes from whole genome data
    Dierckxsens, Nicolas
    Mardulyn, Patrick
    Smits, Guillaume
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (04)
  • [5] Differential responses of Lasiopodomys mandarinus and Lasiopodomys brandtii to chronic hypoxia: a cross-species brain transcriptome analysis
    Dong, Qianqian
    Shi, Luye
    Li, Yangwei
    Jiang, Mengwan
    Sun, Hong
    Wang, Baishi
    Cheng, Han
    Zhang, Yifeng
    Shao, Tian
    Shi, Yuhua
    Wang, Zhenlong
    [J]. BMC GENOMICS, 2018, 19
  • [6] Bayesian Phylogenetics with BEAUti and the BEAST 1.7
    Drummond, Alexei J.
    Suchard, Marc A.
    Xie, Dong
    Rambaut, Andrew
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2012, 29 (08) : 1969 - 1973
  • [7] Taxonomic position of Chinese voles of the tribe Arvicolini and the description of 2 new species from Xizang, China
    Liu, Shaoying
    Jin, Wei
    Liu, Yang
    Murphy, Robert W.
    Lv, Bin
    Hao, Haibang
    Liao, Rui
    Sun, Zhiyu
    Tang, Mingkun
    Chen, Weicai
    Fu, Jianrong
    [J]. JOURNAL OF MAMMALOGY, 2017, 98 (01) : 166 - 182
  • [8] Wozencraft CW., 2005, MAMMAL SPECIES WORLD
  • [9] Extrinsic and intrinsic factors determine the eruptive dynamics of Brandt's voles Microtus brandti in Inner Mongolia, China
    Zhang, ZB
    Pech, R
    Davis, S
    Shi, DZ
    Wan, XR
    Zhong, WQ
    [J]. OIKOS, 2003, 100 (02) : 299 - 310