Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression

被引:55
作者
Bokes, Pavol [1 ]
King, John R. [1 ]
Wood, Andrew T. A. [1 ]
Loose, Matthew [2 ]
机构
[1] Univ Nottingham, Ctr Math Med & Biol, Sch Math Sci, Nottingham NG7 2RD, England
[2] Univ Nottingham, Inst Genet, Queens Med Ctr, Nottingham NG7 2UH, England
基金
英国生物技术与生命科学研究理事会;
关键词
Stochastic modelling; Gene expression; Master equation; Generating function; CELLULAR CONTROL PROCESSES; REGULATORY NETWORKS; ESCHERICHIA-COLI; MOLECULE; NOISE; CELLS; MODEL; STOCHASTICITY; FLUCTUATIONS; MATHEMATICS;
D O I
10.1007/s00285-011-0433-5
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Gene expression at the single-cell level incorporates reaction mechanisms which are intrinsically stochastic as they involve molecular species present at low copy numbers. The dynamics of these mechanisms can be described quantitatively using stochastic master-equation modelling; in this paper we study a generic gene-expression model of this kind which explicitly includes the representations of the processes of transcription and translation. For this model we determine the generating function of the steady-state distribution of mRNA and protein counts and characterise the underlying probability law using a combination of analytic, asymptotic and numerical approaches, finding that the distribution may assume a number of qualitatively distinct forms. The results of the analysis are suitable for comparison with single-molecule resolution gene-expression data emerging from recent experimental studies.
引用
收藏
页码:829 / 854
页数:26
相关论文
共 60 条
  • [1] QUANTITATIVE MODEL FOR GENE-REGULATION BY LAMBDA-PHAGE REPRESSOR
    ACKERS, GK
    JOHNSON, AD
    SHEA, MA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1982, 79 (04): : 1129 - 1133
  • [2] [Anonymous], 1965, Handbook of mathematical functions dover publications
  • [3] [Anonymous], 1977, THEORY STOCHASTIC PR
  • [4] [Anonymous], 2007, NUMERICAL RECIPES
  • [5] Bailey NTJ, 1964, ELEMENTS STOCHASTIC
  • [6] Quantification of protein half-lives in the budding yeast proteome
    Belle, Archana
    Tanay, Amos
    Bitincka, Ledion
    Shamir, Ron
    O'Shea, Erin K.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (35) : 13004 - 13009
  • [8] Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
    Bernstein, JA
    Khodursky, AB
    Lin, PH
    Lin-Chao, S
    Cohen, SN
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (15) : 9697 - 9702
  • [9] Noise in eukaryotic gene expression
    Blake, WJ
    Kærn, M
    Cantor, CR
    Collins, JJ
    [J]. NATURE, 2003, 422 (6932) : 633 - 637
  • [10] Stochastic protein expression in individual cells at the single molecule level
    Cai, L
    Friedman, N
    Xie, XS
    [J]. NATURE, 2006, 440 (7082) : 358 - 362