Electron accommodation dynamics in the DNA base thymine

被引:23
|
作者
King, Sarah B. [1 ]
Stephansen, Anne B. [2 ]
Yokoi, Yuki [3 ]
Yandell, Margaret A. [1 ]
Kunin, Alice [1 ]
Takayanagi, Toshiyuki [3 ]
Neumark, Daniel M. [1 ,4 ]
机构
[1] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[2] Univ Copenhagen, Dept Chem, DK-2100 Copenhagen O, Denmark
[3] Saitama Univ, Dept Chem, Sakura Ku, Saitama, Saitama 3388570, Japan
[4] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Div Chem Sci, Berkeley, CA 94720 USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2015年 / 143卷 / 02期
基金
美国国家科学基金会;
关键词
NUCLEIC-ACID BASES; AB-INITIO; STRAND BREAKS; IONIZATION-POTENTIALS; EXCITED-STATES; NEGATIVE-IONS; ATTACHMENT; ENERGY; PHOTOELECTRON; SPECTROSCOPY;
D O I
10.1063/1.4923343
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The dynamics of electron attachment to the DNA base thymine are investigated using femtosecond time-resolved photoelectron imaging of the gas phase iodide-thymine (I-T) complex. An ultraviolet pump pulse ejects an electron from the iodide and prepares an iodine-thymine temporary negative ion that is photodetached with a near-IR probe pulse. The resulting photoelectrons are analyzed with velocity-map imaging. At excitation energies ranging from -120 meV to + 90 meV with respect to the vertical detachment energy (VDE) of 4.05 eV for I-T, both the dipole-bound and valence-bound negative ions of thymine are observed. A slightly longer rise time for the valence-bound state than the dipole-bound state suggests that some of the dipole-bound anions convert to valence-bound species. No evidence is seen for a dipole-bound anion of thymine at higher excitation energies, in the range of 0.6 eV above the I-T VDE, which suggests that if the dipole-bound anion acts as a "doorway" to the valence-bound anion, it only does so at excitation energies near the VDE of the complex. (C) 2015 AIP Publishing LLC.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Isotope effects in dissociative electron attachment to the DNA base thymine
    Denifl, S.
    Sulzer, P.
    Zappa, F.
    Moser, S.
    Kraeutler, B.
    Echt, O.
    Bohme, D. K.
    Maerk, T. D.
    Scheier, P.
    INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2008, 277 (1-3) : 296 - 299
  • [2] Dynamics of the excised base release in thymine DNA glycosylase during DNA repair process
    Da, Lin-Tai
    Shi, Yi
    Ning, Guodong
    Yu, Jin
    NUCLEIC ACIDS RESEARCH, 2018, 46 (02) : 568 - 581
  • [3] Ultrafast Vibrational Dynamics of Adenine-Thymine Base Pairs in Hydrated DNA
    Dwyer, J. R.
    Szyc, L.
    Nibbering, E. T. J.
    Elsaesser, T.
    ULTRAFAST PHENOMENA XVI, 2009, 92 : 535 - 537
  • [4] Ultrafast vibrational dynamics of adenine-thymine base pairs in DNA oligomers
    Dwyer, Jason R.
    Szyc, Lukasz
    Nibbering, Erik T. J.
    Elsaesser, Thomas
    JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (36): : 11194 - 11197
  • [5] DNA base stacking: The stacked uracil/uracil and thymine/thymine minima
    Hunter, Ruairidh S.
    van Mourik, Tanja
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2012, 33 (27) : 2161 - 2172
  • [6] Base flipping of the thymine dimer in duplex DNA
    O'Neil, Lauren L.
    Grossfield, Alan
    Wiest, Olaf
    JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (40): : 11843 - 11849
  • [7] On the absolute value for the cross-section of dissociative electron attachment (DEA) to the DNA base thymine
    Kopyra, Janina
    Koenig-Lehmann, Constanze
    Illenberger, Eugen
    INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 2009, 281 (1-2) : 89 - 91
  • [8] Direct Measurement of the Dynamics of Excess Electron Transfer through Consecutive Thymine Sequence in DNA
    Park, Man Jae
    Fujitsuka, Mamoru
    Kawai, Kiyohiko
    Majima, Tetsuro
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (39) : 15320 - 15323
  • [9] Dynamics of Excess-Electron Transfer through Alternating Adenine:Thymine Sequences in DNA
    Lin, Shih-Hsun
    Fujitsuka, Mamoru
    Majima, Tetsuro
    CHEMISTRY-A EUROPEAN JOURNAL, 2015, 21 (45) : 16190 - 16194
  • [10] Dynamics of photoinduced processes in adenine and thymine base pairs
    Samoylova, E
    Lippert, H
    Ullrich, S
    Hertel, IV
    Radloff, W
    Schultz, T
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (06) : 1782 - 1786