Comparative Study of REDOR and CPPI Derived Order Parameters by 1H-Detected MAS NMR and MD Simulations

被引:18
作者
Asami, Sam [1 ]
Reif, Bernd [1 ,2 ]
机构
[1] TUM, Munich Ctr Integrated Prot Sci CIPS M, Dept Chem, Lichtenbergstr 4, D-85747 Garching, Germany
[2] Deutsch Forschungszentrum Gesundheit & Umwelt, Helmholtz Zentrum Munchen HMGU, Ingolstadter Landstr 1, D-85764 Neuherberg, Germany
关键词
SOLID-STATE NMR; NUCLEAR-MAGNETIC-RESONANCE; ANGLE-SPINNING NMR; ATOMIC-RESOLUTION STRUCTURE; PROTEIN BACKBONE DYNAMICS; FULLY PROTONATED PROTEINS; DIPOLAR COUPLINGS; AMYLOID FIBRILS; PERDEUTERATED PROTEINS; CONFORMATIONAL FLEXIBILITY;
D O I
10.1021/acs.jpcb.7b06812
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The measurement of dipolar couplings among directly bonded nuclei yields direct information on the amplitude of dynamic processes in the solid-state. For a reliable motional analysis using, e.g., the model-free approach, a correct quantification of the absolute values of these order parameters is absolutely essential. In the absence of a reference value for the rigid limit, too low dipolar coupling values might be misinterpreted as motion. Therefore, a detailed understanding of the effects that influence the quantification of the experimental order parameters is necessary. We compare here RED OR and CPPI derived order parameters assessed in H-1-detected experiments, and discuss the influence of remote protons and rf inhomogeneity on the extracted dipolar coupling constant for MAS rotation frequencies in the range 20-100 kHz. Experimental results are furthermore compared with the order parameter obtained from a molecular dynamics simulation. We find that fast magic-angle spinning up to 100 kHz can yield artifact-free REDOR based H-1,N-15 order parameters for perdeuterated and 100% amide back-exchanged proteins, and potentially even in uniformly protonated samples. We believe that awareness of systematic errors introduced by the measurement and in the analysis of order parameters will yield a better understanding of the dynamic properties of a protein derived from solid-state NMR observables.
引用
收藏
页码:8719 / 8730
页数:12
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