Twelve microsatellite markers in the invasive tunicate, Didemnum vexillum, isolated from low genome coverage 454 pyrosequencing reads

被引:10
作者
Abbott, Cathryn L. [1 ]
Ebert, Daniel [2 ]
Tabata, Amy [1 ]
Therriault, Thomas W. [1 ]
机构
[1] Fisheries & Oceans Canada, Pacific Biol Stn, Nanaimo, BC V9T 6N7, Canada
[2] Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada
关键词
Didemnidae; Ascidiacea; SSRs; Next generation sequencing; Tunicate invasions; Microsatellite isolation;
D O I
10.1007/s12686-010-9294-2
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
454 pyrosequencing reads were used to isolate microsatellites in the global marine ascidian invader, Didemnum vexillum. This method allows simple and cost-effective isolation of new markers from organisms without existing genomic information and, to our knowledge, has not been used before to develop a polymorphic microsatellite marker set. Loci had between two and eleven alleles and overall mean observed and expected heterozygosities of 0.57 and 0.62, respectively. These markers will greatly facilitate research required to develop control and mitigation strategies for D. vexillum.
引用
收藏
页码:79 / 81
页数:3
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