Establishment of a novel glycolysis-related prognostic gene signature for ovarian cancer and its relationships with immune infiltration of the tumor microenvironment

被引:39
作者
Bi, Jianlei [1 ,2 ]
Bi, Fangfang [1 ]
Pan, Xue [1 ]
Yang, Qing [1 ]
机构
[1] China Med Univ, Shengjing Hosp, Dept Obstet & Gynecol, Shenyang, Peoples R China
[2] Dalian Med Univ, Hosp 2, Dept Obstet & Gynecol, Dalian, Peoples R China
基金
中国国家自然科学基金;
关键词
Ovarian cancer; Glycolysis; Tumor microenvironment; Immune alterations; Prognostic signature; PROSTATE-CANCER; GLUCOSE-METABOLISM; DECORIN; COLON; CELLS;
D O I
10.1186/s12967-021-03057-0
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Background Glycolysis affects tumor growth, invasion, chemotherapy resistance, and the tumor microenvironment. In this study, we aimed to construct a glycolysis-related prognostic model for ovarian cancer and analyze its relationship with the tumor microenvironment's immune cell infiltration. Methods We obtained six glycolysis-related gene sets for gene set enrichment analysis (GSEA). Ovarian cancer data from The Cancer Genome Atlas (TCGA) database and two Gene Expression Omnibus (GEO) datasets were divided into two groups after removing batch effects. We compared the tumor environments' immune components in high-risk and low-risk groups and analyzed the correlation between glycolysis- and immune-related genes. Then, we generated and validated a predictive model for the prognosis of ovarian cancer using the glycolysis-related genes. Results Overall, 27/329 glycolytic genes were associated with survival in ovarian cancer, 8 of which showed predictive value. The tumor cell components in the tumor microenvironment did not differ between the high-risk and low-risk groups; however, the immune score differed significantly between groups. In total, 13/24 immune cell types differed between groups, including 10 T cell types and three other immune cell types. Eight glycolysis-related prognostic genes were related to the expression of multiple immune-related genes at varying degrees, suggesting a relationship between glycolysis and immune response. Conclusions We identified eight glycolysis-related prognostic genes that effectively predicted survival in ovarian cancer. To a certain extent, the newly identified gene signature was related to the tumor microenvironment, especially immune cell infiltration and immune-related gene expression. These findings provide potential biomarkers and therapeutic targets for ovarian cancer.
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页数:13
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共 40 条
[1]   The parafibromin tumor suppressor protein interacts with actin-binding proteins actinin-2 and actinin-3 [J].
Agarwal, Sunita K. ;
Simonds, William F. ;
Marx, Stephen J. .
MOLECULAR CANCER, 2008, 7 (1)
[2]   The expressions of stem cell markers: Oct4, Nanog, Sox2, nucleostemin, Bmi, Zfx, Tcl1, Tbx3, Dppa4, and Esrrb in bladder, colon, and prostate cancer, and certain cancer cell lines [J].
Amini, Sabrieh ;
Fathi, Fardin ;
Mobalegi, Jafar ;
Sofimajidpour, Heshmatollah ;
Ghadimi, Tayyeb .
ANATOMY & CELL BIOLOGY, 2014, 47 (01) :1-11
[3]   Selection of Endogenous Control Reference Genes for Studies on Type 1 or Type 2 Endometrial Cancer [J].
Ayakannu, Thangesweran ;
Taylor, Anthony H. ;
Konje, Justin C. .
SCIENTIFIC REPORTS, 2020, 10 (01)
[4]   The neurotrophic factor artemin promotes pancreatic cancer invasion [J].
Ceyhan, Guralp O. ;
Giese, Nathalia A. ;
Erkan, Mort ;
Kerscher, Annika G. ;
Wente, Moritz N. ;
Giese, Thomas ;
Büchler, Markus W. ;
Friess, Helmut .
ANNALS OF SURGERY, 2006, 244 (02) :274-281
[5]   Metabolic Competition in the Tumor Microenvironment Is a Driver of Cancer Progression [J].
Chang, Chih-Hao ;
Qiu, Jing ;
O'Sullivan, David ;
Buck, Michael D. ;
Noguchi, Takuro ;
Curtis, Jonathan D. ;
Chen, Qiongyu ;
Gindin, Mariel ;
Gubin, Matthew M. ;
van der Windt, Gerritje J. W. ;
Tonc, Elena ;
Schreiber, Robert D. ;
Pearce, Edward J. ;
Pearce, Erika L. .
CELL, 2015, 162 (06) :1229-1241
[6]   miR-22 as a prognostic factor targets glucose transporter protein type 1 in breast cancer [J].
Chen, Bo ;
Tang, Hailin ;
Liu, Xiaoping ;
Liu, Peng ;
Yang, Lu ;
Xie, Xinhua ;
Ye, Feng ;
Song, Cailu ;
Xie, Xiaoming ;
Wei, Weidong .
CANCER LETTERS, 2015, 356 (02) :410-417
[7]   Loss of FBP1 by Snail-Mediated Repression Provides Metabolic Advantages in Basal-like Breast Cancer [J].
Dong, Chenfang ;
Yuan, Tingting ;
Wu, Yadi ;
Wang, Yifan ;
Fan, Teresa W. M. ;
Miriyala, Sumitra ;
Lin, Yiwei ;
Yao, Jun ;
Shi, Jian ;
Kang, Tiebang ;
Lorkiewicz, Pawel ;
St Clair, Daret ;
Hung, Mien-Chie ;
Evers, B. Mark ;
Zhou, Binhua P. .
CANCER CELL, 2013, 23 (03) :316-331
[8]   Bcl2 inhibitor ABT737 reverses the Warburg e ffect via the Sirt3-HIF1? axis to promote oxidative stress -induced apoptosis in ovarian cancer cells [J].
Dong, Delu ;
Dong, Yuan ;
Fu, Jiaying ;
Lu, Shengyao ;
Yuan, Chunli ;
Xia, Meihui ;
Sun, Liankun .
LIFE SCIENCES, 2020, 255
[9]   Fructose-Bisphosphate Aldolase A Is a Potential Metastasis-Associated Marker of Lung Squamous Cell Carcinoma and Promotes Lung Cell Tumorigenesis and Migration [J].
Du, Sha ;
Guan, Zhuzhu ;
Hao, Lihong ;
Song, Yang ;
Wang, Lan ;
Gong, Linlin ;
Liu, Lu ;
Qi, Xiaoyu ;
Hou, Zhaoyuan ;
Shao, Shujuan .
PLOS ONE, 2014, 9 (01)
[10]   Nutrient transporters in cancer: Relevance to Warburg hypothesis and beyond [J].
Ganapathy, Vadivel ;
Thangaraju, Muthusamy ;
Prasad, Puttur D. .
PHARMACOLOGY & THERAPEUTICS, 2009, 121 (01) :29-40