Apart From the Diet, the Ruminal Microbiota of Lambs Is Modified in Relation to Their Genetic Potential for Feed Efficiency or Feeding Behavior

被引:11
作者
Marie-Etancelin, Christel [1 ]
Tortereau, Flavie [1 ]
Gabinaud, Beatrice [1 ]
Boggio, Guillermo Martinez [1 ]
Le Graverand, Quentin [1 ]
Marcon, Didier [2 ]
De Almeida, Marie-Lea [1 ]
Pascal, Geraldine [1 ]
Weisbecker, Jean-Louis [1 ]
Meynadier, Annabelle [1 ]
机构
[1] Univ Toulouse, ENVT, INPT, INRAE,GenPhySE, Toulouse, France
[2] INRAE, P3R, Osmoy, France
关键词
ruminal microbiota; feed efficiency; feeding behavior; lamb; selection; RUMEN MICROBIOTA; BACTERIAL COMMUNITY; ADAPTATION; MECHANISMS; PROFILES; IMPACT; FLUID; COWS;
D O I
10.3389/fmicb.2021.759432
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Using two successive types of diets (100% concentrate and 67% forage), this study explores the relationship between the ruminal microbiota of 78 Romane lambs and their feed efficiency (residual feed intake trait) or feeding behavior (feeding rate trait). Analysis was carried out phenotypically by correlating feed efficiency or feeding behavior traits with the relative abundance of bacteria at the phylum, family, and genus levels, and then genetically by comparing the microbiota of lambs selected for extreme breeding values for residual feed intake or feeding rate. Our results confirmed the major effect of diet on the ruminal microbiota composition. The microbiota of lambs consuming a forage-based diet was distinguished by higher microbial diversity and also by higher relative abundance of Firmicutes, whereas Bacteriodetes and Actinobacteria were relatively more abundant in the microbiota of lambs consuming a concentrate-based diet. Moreover, the comparison of lambs divergent for residual feed intake breeding values revealed that regardless of diet, more efficient lambs possessed a ruminal microbiota enriched in Coprococcus, Moryella, [Eubacterium] Brachy group, and [Eubacterium] hallii group, but depleted in Lachnospiraceae FD2005 and Shuttleworthia. The connection between microbiota composition and feeding rate was more tenuous, with no link between the abundance of particular genera and lambs genetically divergent for feeding rate.
引用
收藏
页数:15
相关论文
共 46 条
[1]   Identification of Microbial Genetic Capacities and Potential Mechanisms Within the Rumen Microbiome Explaining Differences in Beef Cattle Feed Efficiency [J].
Auffret, Marc D. ;
Stewart, Robert D. ;
Dewhurst, Richard J. ;
Duthie, Carol-Anne ;
Watson, Mick ;
Roehe, Rainer .
FRONTIERS IN MICROBIOLOGY, 2020, 11
[2]   Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants [J].
Ben Shabat, Sheerli Kruger ;
Sasson, Goor ;
Doron-Faigenboim, Adi ;
Durman, Thomer ;
Yaacoby, Shamay ;
Miller, Margret E. Berg ;
White, Bryan A. ;
Shterzer, Naama ;
Mizrahi, Itzhak .
ISME JOURNAL, 2016, 10 (12) :2958-2972
[3]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[4]   Gut Commensal E. coli Proteins Activate Host Satiety Pathways following Nutrient-Induced Bacterial Growth [J].
Breton, Jonathan ;
Tennoune, Naouel ;
Lucas, Nicolas ;
Francois, Marie ;
Legrand, Romain ;
Jacquemot, Justine ;
Goichon, Alexis ;
Guerin, Charlene ;
Peltier, Johann ;
Pestel-Caron, Martine ;
Chan, Philippe ;
Vaudry, David ;
do Rego, Jean-Claude ;
Lienard, Fabienne ;
Penicaud, Luc ;
Fioramonti, Xavier ;
Ebenezer, Ivor S. ;
Hokfelt, Tomas ;
Dechelotte, Pierre ;
Fetissov, Serguei O. .
CELL METABOLISM, 2016, 23 (02) :324-334
[5]   Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle [J].
Carberry, Ciara A. ;
Kenny, David A. ;
Han, Sukkyan ;
McCabe, Matthew S. ;
Waters, Sinead M. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2012, 78 (14) :4949-4958
[6]   Degradation of cinnamate via β-oxidation to benzoate by a defined, syntrophic consortium of anaerobic bacteria [J].
Defnoun, S ;
Ambrosio, M ;
Garcia, JL ;
Traoré, A ;
Labat, M .
CURRENT MICROBIOLOGY, 2003, 46 (01) :47-52
[7]   A Structural and Functional Elucidation of the Rumen Microbiome Influenced by Various Diets and Microenvironments [J].
Deusch, Simon ;
Camarinha-Silva, Amelia ;
Conrad, Juergen ;
Beifuss, Uwe ;
Rodehutscord, Markus ;
Seifert, Jana .
FRONTIERS IN MICROBIOLOGY, 2017, 8
[8]   Diet and feed efficiency status affect rumen microbial profiles of sheep [J].
Ellison, M. J. ;
Conant, G. C. ;
Lamberson, W. R. ;
Cockrum, R. R. ;
Austin, K. J. ;
Rule, D. C. ;
Cammack, K. M. .
SMALL RUMINANT RESEARCH, 2017, 156 :12-19
[9]   Diet Alters Both the Structure and Taxonomy of the Ovine Gut Microbial Ecosystem [J].
Ellison, Melinda J. ;
Conant, Gavin C. ;
Cockrum, Rebecca R. ;
Austin, Kathy J. ;
Huan Truong ;
Becchi, Michela ;
Lamberson, William R. ;
Cammack, Kristi M. .
DNA RESEARCH, 2014, 21 (02) :115-125
[10]   FROGS: Find, Rapidly, OTUs with Galaxy Solution [J].
Escudie, Frederic ;
Auer, Lucas ;
Bernard, Maria ;
Mariadassou, Mahendra ;
Cauquil, Laurent ;
Vidal, Katia ;
Maman, Sarah ;
Hernandez-Raquet, Guillermina ;
Combes, Sylvie ;
Pascal, Geraldine .
BIOINFORMATICS, 2018, 34 (08) :1287-1294