Easy and unambiguous sequential assignments of intrinsically disordered proteins by correlating the backbone 15N or 13C' chemical shifts of multiple contiguous residues in highly resolved 3D spectra

被引:30
作者
Yoshimura, Yuichi [1 ,2 ]
Kulminskaya, Natalia V. [1 ,2 ]
Mulder, Frans A. A. [1 ,2 ]
机构
[1] Aarhus Univ, Dept Chem, DK-8000 Aarhus C, Denmark
[2] Aarhus Univ, Interdisciplinary Nanosci Ctr iNANO, DK-8000 Aarhus C, Denmark
关键词
Carbonyl-carbonyl J-coupling; Chemical shift degeneracy; Intrinsically disordered proteins; Homonuclear isotropic mixing; Sequential resonance assignment; MAGNETIC-RESONANCE RELAXATION; PROTONLESS NMR EXPERIMENTS; HARTMANN-HAHN TRANSFER; MODEL-FREE APPROACH; CORRELATION SPECTROSCOPY; TEMPERATURE-DEPENDENCE; IMPROVED SENSITIVITY; UNFOLDED PROTEINS; LARGER PROTEINS; ALPHA-SYNUCLEIN;
D O I
10.1007/s10858-014-9890-7
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Sequential resonance assignment strategies are typically based on matching one or two chemical shifts of adjacent residues. However, resonance overlap often leads to ambiguity in resonance assignments in particular for intrinsically disordered proteins. We investigated the potential of establishing connectivity through the three-bond couplings between sequentially adjoining backbone carbonyl carbon nuclei, combined with semi-constant time chemical shift evolution, for resonance assignments of small folded and larger unfolded proteins. Extended sequential connectivity strongly lifts chemical shift degeneracy of the backbone nuclei in disordered proteins. We show here that 3D (H)N(COCO)NH and (HN)CO(CO)NH experiments with relaxation-optimized multiple pulse mixing correlate up to seven adjacent backbone amide nitrogen or carbonyl carbon nuclei, respectively, and connections across proline residues are also obtained straightforwardly. Multiple, recurrent long-range correlations with ultra-high resolution allow backbone H-1(N), N-15(H), and C-13' resonance assignments to be completed from a single pair of 3D experiments.
引用
收藏
页码:109 / 121
页数:13
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