A Graphical-User-Interface application for multifractal analysis of soil and plant structures

被引:12
作者
Han, Liwen [1 ]
Srocke, Franziska [1 ,2 ]
Masek, Ondrej [2 ]
Smith, Donald L. [1 ]
Lafond, Jonathan A. [3 ]
Allaire, Suzanne [3 ,4 ]
Dutilleul, Pierre [1 ]
机构
[1] McGill Univ, Dept Plant Sci, Macdonald Campus,21111 Lakeshore Rd, Ste Anne De Bellevue, PQ H9X 3V9, Canada
[2] Univ Edinburgh, UK Biochar Res Ctr, Sch Geosci, Kings Bldg, Edinburgh EH9 3JN, Midlothian, Scotland
[3] Univ Laval, Dept Sols & Genie Agroalimentaire, 2425 Rue Agr, Quebec City, PQ G1V 0A6, Canada
[4] GECA Environm, 4018 Ave Pyrenees, Quebec City, PQ G1P 3L9, Canada
基金
加拿大创新基金会; 加拿大自然科学与工程研究理事会;
关键词
Soil and plant structures; Multifractal analysis; Singularity spectrum; Renyi spectrum; Graphical-User-Interface application; CT IMAGES; DIMENSIONS;
D O I
10.1016/j.compag.2020.105454
中图分类号
S [农业科学];
学科分类号
09 ;
摘要
Multifractal systems are common in nature, and fractal theory has been applied to a large number of patterns for curves, surfaces and volumes in a variety of research domains. For instance, researchers in soil science recently applied multifractal analysis (MFA) to study porosity, which is linked to soil gas diffusion, water content and therefore, nutrient transportation for plants. The calculation of multifractal spectra (singularity, Renyi) is complex and the data can be 'big' and of various forms (graphical or numerical), yet the results are highly informative. An easy-to-use GUI-based (GUI: Graphical User Interface) application would allow researchers to concentrate on the results instead of having to deal with the technical aspects. This note fills the gap with the MFA application program, originally written in MATLAB and provided with a user's guide. Datasets on soil and plant structures (soil porosity, tree branching, biochar structure) are used in three examples, which help illustrate the variety of inputs with our MFA application, demonstrate its generality in performing the MFA method, and interpret the program outputs.
引用
收藏
页数:7
相关论文
共 14 条
[1]   Applications of computed tomography (CT) scanning technology in forest research: a timely update and review [J].
Beaulieu, Jean ;
Dutilleul, Pierre .
CANADIAN JOURNAL OF FOREST RESEARCH, 2019, 49 (10) :1173-1188
[2]   FRACTAL DIMENSIONS OF LANDSCAPES AND OTHER ENVIRONMENTAL DATA [J].
BURROUGH, PA .
NATURE, 1981, 294 (5838) :240-242
[3]   Renyi dimensions of soil pore size distribution [J].
Caniego, FJ ;
Martín, MA ;
San José, F .
GEODERMA, 2003, 112 (3-4) :205-216
[4]   DIRECT DETERMINATION OF THE F(ALPHA) SINGULARITY SPECTRUM [J].
CHHABRA, A ;
JENSEN, RV .
PHYSICAL REVIEW LETTERS, 1989, 62 (12) :1327-1330
[5]  
Dutilleul P., 2016, BRANCHING ROOTING OU
[6]   Crown traits of coniferous trees and their relation to shade tolerance can differ with leaf type: a biophysical demonstration using computed tomography scanning data [J].
Dutilleul, Pierre ;
Han, Liwen ;
Valladares, Fernando ;
Messier, Christian .
FRONTIERS IN PLANT SCIENCE, 2015, 6 :1-13
[7]  
Evertsz C.J., 1992, Chaos Fract, V473, P921
[8]   Inclusion of the fractal dimension of leafless plant structure in the Beer-Lambert law [J].
Foroutan-Pour, K ;
Dutilleul, P ;
Smith, DL .
AGRONOMY JOURNAL, 2001, 93 (02) :333-338
[9]   GENERALIZED DIMENSIONS OF STRANGE ATTRACTORS [J].
GRASSBERGER, P .
PHYSICS LETTERS A, 1983, 97 (06) :227-230
[10]   Acquisition, optimization and interpretation of X-ray computed tomographic imagery: applications to the geosciences [J].
Ketcham, RA ;
Carlson, WD .
COMPUTERS & GEOSCIENCES, 2001, 27 (04) :381-400