Assembly and phylogenetic analysis of the complete chloroplast genome sequence of Gentiana scabra Bunge

被引：2

作者：

Shang, Mingyue ^{[1
]}

Meng, Xiangxiao ^{[2
]}

Yan, Fulin ^{[3
]}

Qian, Jun ^{[1
]}

Duan, Baozhong ^{[1
,2
]}

Wang, Ying ^{[1
]}

机构：

[1] Dali Univ, Coll Pharmaceut Sci, Dali, Peoples R China

[2] China Acad Chinese Med Sci, Inst Chinese Mat Medica, Beijing, Peoples R China

[3] Guizhou Univ Tradit Chinese Med, Dept Pharm, Guiyang, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 02期

关键词：

Gentiana scabra; chloroplast genome; phylogenetic analysis;

D O I：

10.1080/23802359.2020.1748538

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

The first complete chloroplast (cp) genome of Gentiana scabra was determined from Illumina paired-end sequencing data in this study. The cp genome of G. scabra is 146,915 bp in length with 37.84% overall GC content, including a large single copy (LSC) region of 79,350 bp and a small single copy (SSC) region of 17,027 bp, which are separated by a pair of inverted repeats (IRs) of 25,269 bp. The cp genome is composed of 130 genes, including 85 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. Phylogenetic analysis indicated that the G. scabra is more closely related to subfamily of Gentianoideae than Menyanthaceae.

引用

页码：1691 / 1692

页数：2

共 10 条

[1] NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].

Dierckxsens, Nicolas ;

Mardulyn, Patrick ;

Smits, Guillaume .

NUCLEIC ACIDS RESEARCH, 2017, 45 (04)

[2] The anti-inflammatory secoiridoid glycosides from Gentianae Scabrae Radix: the root and rhizome of Gentiana scabra [J].

He, Yu-Min ;

Zhu, Shu ;

Ge, Yue-Wei ;

Kazuma, Kohei ;

Zou, Kun ;

Cai, Shao-Qing ;

Komatsu, Katsuko .

JOURNAL OF NATURAL MEDICINES, 2015, 69 (03) :303-312

[3] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[4] Hepatoprotection of Gentiana scabra Extract and Polyphenols in Liver of Carbon Tetrachloride-Intoxicated Mice [J].

Ko, Huey-Jiun ;

Chen, Jyun-Han ;

Ng, Lean-Teik .

JOURNAL OF ENVIRONMENTAL PATHOLOGY TOXICOLOGY AND ONCOLOGY, 2011, 30 (03) :179-187

[5] Chemical constituents of the rhizomes and roots of Gentiana scabra (Gentianaceae) [J].

Li, Wei ;

Zhou, Wei ;

Shim, Sang Hee ;

Kim, Young Ho .

BIOCHEMICAL SYSTEMATICS AND ECOLOGY, 2015, 61 :169-174

[6] RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies [J].

Stamatakis, Alexandros .

BIOINFORMATICS, 2014, 30 (09) :1312-1313

[7] Complete plastid genome of Gentiana trichotoma (Gentianaceae) and phylogenetic analysis [J].

Sun, Shanshan ;

Wang, Hui ;

Fu, Pengcheng .

MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02) :2775-2776

[8] GeSeq - versatile and accurate annotation of organelle genomes [J].

Tillich, Michael ;

Lehwark, Pascal ;

Pellizzer, Tommaso ;

Ulbricht-Jones, Elena S. ;

Fischer, Axel ;

Bock, Ralph ;

Greiner, Stephan .

NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) :W6-W11

[9] The complete chloroplast genome of Gentiana macrophylla [J].

Wang, Xiaofan ;

Yang, Na ;

Su, Jiao ;

Zhang, Hui ;

Cao, Xiaoyan .

MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02) :395-396

[10] Evaluation of seven DNA barcodes for differentiating closely related medicinal Gentiana species and their adulterants [J].

Wong, Ka-Lok ;

But, Paul Pui-Hay ;

Shaw, Pang-Chui .

CHINESE MEDICINE, 2013, 8

← 1 →