Open Science principles for accelerating trait-based science across the Tree of Life

被引:143
作者
Gallagher, Rachael V. [1 ]
Falster, Daniel S. [2 ,3 ]
Maitner, Brian S. [4 ]
Salguero-Gomez, Roberto [5 ,6 ,7 ]
Vandvik, Vigdis [8 ,9 ]
Pearse, William D. [10 ,11 ]
Schneider, Florian D.
Kattge, Jens [12 ,13 ]
Poelen, Jorrit H.
Madin, Joshua S. [14 ]
Ankenbrand, Markus J. [15 ,16 ,17 ]
Penone, Caterina [18 ]
Feng, Xiao [4 ]
Adams, Vanessa M. [19 ]
Alroy, John [1 ]
Andrew, Samuel C. [20 ]
Balk, Meghan A. [21 ]
Bland, Lucie M. [22 ]
Boyle, Brad L. [4 ]
Bravo-Avila, Catherine H. [23 ,24 ]
Brennan, Ian [25 ]
Carthey, Alexandra J. R. [1 ]
Catullo, Renee [25 ]
Cavazos, Brittany R. [26 ]
Conde, Dalia A. [27 ,28 ,29 ]
Chown, Steven L. [30 ]
Fadrique, Belen [23 ]
Gibb, Heloise [31 ,32 ]
Halbritter, Aud H. [8 ,9 ]
Hammock, Jennifer [33 ]
Hogan, J. Aaron [34 ]
Holewa, Hamish [20 ]
Hope, Michael [20 ]
Iversen, Colleen M. [35 ,36 ]
Jochum, Malte [13 ,18 ,37 ]
Kearney, Michael [38 ]
Keller, Alexander [15 ,16 ]
Mabee, Paula [39 ]
Manning, Peter [40 ]
McCormack, Luke [41 ]
Michaletz, Sean T. [42 ,43 ]
Park, Daniel S. [44 ,45 ]
Perez, Timothy M. [23 ,24 ]
Pineda-Munoz, Silvia [46 ,47 ]
Ray, Courtenay A. [48 ]
Rossetto, Maurizio [49 ,50 ,51 ]
Sauquet, Herve [2 ,3 ,49 ,50 ,52 ]
Sparrow, Benjamin [53 ]
Spasojevic, Marko J. [54 ]
Telford, Richard J. [8 ,9 ]
机构
[1] Macquarie Univ, Dept Biological Sciences, Sydney, NSW, Australia
[2] Univ New South Wales, Evolut & Ecol Res Ctr, Sydney, NSW, Australia
[3] Univ New South Wales, Sch Biol Earth & Environm Sci, Sydney, NSW, Australia
[4] Univ Arizona, Dept Ecol & Evolut Biol, Tucson, AZ 85721 USA
[5] Univ Oxford, Dept Zoology, Oxford, England
[6] Univ Queensland, Ctr Biodivers & Conservat Sci, Brisbane, Qld, Australia
[7] Max Plank Inst Demog Res, Evolutionary Demog Lab, Rostock, Germany
[8] Univ Bergen, Dept Biol Sci, Bergen, Norway
[9] Univ Bergen, Bjerknes Ctr Climate Res, Bergen, Norway
[10] Utah State Univ, Ctr Ecol, Logan, UT 84322 USA
[11] Utah State Univ, Dept Biol, Logan, UT 84322 USA
[12] Max Planck Inst Biogeochem, Jena, Germany
[13] German Ctr Integrat Biodivers Res iDiv, Leipzig, Germany
[14] Univ Hawaii Manoa, Hawaii Inst Marine Biol, Manoa, HI USA
[15] Univ Wurzburg, Dept Bioinformat, BioCtr, Wurzburg, Germany
[16] Univ Wurzburg, Ctr Computat & Theoret Biol, Bioctr, Wurzburg, Germany
[17] Univ Hosp Wuerzburg, Comprehens Heart Failure Ctr, Wurzburg, Germany
[18] Univ Bern, Inst Plant Sci, Bern, Switzerland
[19] Univ Tasmania, Discipline Geog & Spatial Sci, Hobart, Tas, Australia
[20] CSIRO, Canberra, ACT, Australia
[21] Univ Arizona, Bio5 Inst, Tucson, AZ USA
[22] Deakin Univ, Ctr Integrat Ecol, Sch Life & Environm Sci, Geelong, Vic, Australia
[23] Univ Miami, Dept Biol, Miami, FL USA
[24] Fairchild Trop Bot Garden, Coral Gables, FL USA
[25] Australian Natl Univ, Res Sch Biol, Canberra, ACT, Australia
[26] Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA USA
[27] Species360 Conservat Sci Alliance, Bloomington, MN USA
[28] Univ Southern Denmark, Interdisciplinary Ctr Populat Dynam, Odense, Denmark
[29] Univ Southern Denmark, Dept Biol, Odense, Denmark
[30] Monash Univ, Sch Biol Sci, Melbourne, Vic, Australia
[31] La Trobe Univ, Dept Ecol Environm & Evolut, Melbourne, Vic, Australia
[32] La Trobe Univ, Ctr Future Landscapes, Melbourne, Vic, Australia
[33] Smithsonian Inst, Natl Museum Nat Hist, Washington, DC 20560 USA
[34] Florida Int Univ, Dept Biol Sci, Int Ctr Trop Bot, Miami, FL 33199 USA
[35] Oak Ridge Natl Lab, Climate Change Sci Inst, Oak Ridge, TN USA
[36] Oak Ridge Natl Lab, Div Environm Sci, Oak Ridge, TN USA
[37] Univ Leipzig, Inst Biol, Leipzig, Germany
[38] Univ Melbourne, Sch BioSci, Melbourne, Vic, Australia
[39] Univ South Dakota, Dept Biol, Vermillion, SD USA
[40] Senckenberg Biodivers & Climate Res Ctr SBiKF, Frankfurt, Germany
[41] Morton Arboretum, Ctr Tree Sci, Lisle, IL USA
[42] Univ British Columbia, Dept Bot, Vancouver, BC, Canada
[43] Univ British Columbia, Biodivers Res Ctr, Vancouver, BC, Canada
[44] Harvard Univ, Dept Organism & Evolutionary Biol, Cambridge, MA USA
[45] Harvard Univ, Harvard Univ Herbaria, Cambridge, MA USA
[46] Georgia Inst Technol, Sch Biol Sci, Atlanta, GA 30332 USA
[47] Georgia Inst Technol, Sch Earth & Atmospher Sci, Atlanta, GA 30332 USA
[48] Arizona State Univ, Sch Life Sci, Tempe, AZ USA
[49] Royal Bot Gardens, Natl Herbarium New South Wales, Sydney, NSW, Australia
[50] Domain Trust, Sydney, NSW, Australia
基金
瑞士国家科学基金会; 澳大利亚研究理事会; 美国能源部;
关键词
PLANT FUNCTIONAL TRAITS; GENERATION TIME; R PACKAGE; DATABASE; ECOLOGY; EVOLUTION; KNOWLEDGE; TRANSPARENCY; CHALLENGES; DIVERSITY;
D O I
10.1038/s41559-020-1109-6
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Synthesizing trait observations and knowledge across the Tree of Life remains a grand challenge for biodiversity science. Species traits are widely used in ecological and evolutionary science, and new data and methods have proliferated rapidly. Yet accessing and integrating disparate data sources remains a considerable challenge, slowing progress toward a global synthesis to integrate trait data across organisms. Trait science needs a vision for achieving global integration across all organisms. Here, we outline how the adoption of key Open Science principles-open data, open source and open methods-is transforming trait science, increasing transparency, democratizing access and accelerating global synthesis. To enhance widespread adoption of these principles, we introduce the Open Traits Network (OTN), a global, decentralized community welcoming all researchers and institutions pursuing the collaborative goal of standardizing and integrating trait data across organisms. We demonstrate how adherence to Open Science principles is key to the OTN community and outline five activities that can accelerate the synthesis of trait data across the Tree of Life, thereby facilitating rapid advances to address scientific inquiries and environmental issues. Lessons learned along the path to a global synthesis of trait data will provide a framework for addressing similarly complex data science and informatics challenges. A decentralized community is introduced that aims to standardize and integrate species trait data across organismal groups, based on principles of Open Science.
引用
收藏
页码:294 / 303
页数:10
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