GENETICS IN ENDOCRINOLOGY Genetic diagnosis of endocrine diseases by NGS: novel scenarios and unpredictable results and risks

被引:19
作者
Persani, Luca [1 ,2 ]
de Filippis, Tiziana [2 ]
Colombo, Carla [2 ]
Gentilini, Davide [3 ,4 ]
机构
[1] Univ Milan, Dept Clin Sci & Community Hlth, Milan, Italy
[2] IRCCS Ist Auxol Italiano, Lab Endocrine & Metab Res, Milan, Italy
[3] IRCCS Ist Auxol Italiano, Lab Mol Biol Res, Milan, Italy
[4] Univ Pavia, Pavia, Italy
关键词
CONGENITAL HYPOGONADOTROPIC HYPOGONADISM; GENERATION SEQUENCING ASSAY; THYROID-NODULES; ADRENOCORTICAL CARCINOMA; GERMLINE MUTATIONS; RARE VARIANTS; EXOME; PHEOCHROMOCYTOMA; ASSOCIATION; GUIDELINES;
D O I
10.1530/EJE-18-0379
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
The technological advancements in genetics produced a profound impact on the research and diagnostics of non-communicable diseases. The availability of next-generation sequencing (NGS) allowed the identification of novel candidate genes but also an in-depth modification of the understanding of the architecture of several endocrine diseases. Several different NGS approaches are available allowing the sequencing of several regions of interest or the whole exome or genome (WGS, WES or targeted NGS), with highly variable costs, potentials and limitations that should be clearly known before designing the experiment. Here, we illustrate the NGS scenario, describe the advantages and limitations of the different protocols and review some of the NGS results obtained in different endocrine conditions. We finally give insights on the terminology and requirements for the implementation of NGS in research and diagnostic labs.
引用
收藏
页码:R111 / R123
页数:13
相关论文
共 81 条
[1]   SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data [J].
Abel, Haley J. ;
Duncavage, Eric J. ;
Becker, Nils ;
Armstrong, Jon R. ;
Magrini, Vincent J. ;
Pfeifer, John D. .
BIOINFORMATICS, 2010, 26 (21) :2684-2688
[2]   Central Precocious Puberty Caused by Mutations in the Imprinted Gene MKRN3 [J].
Abreu, Ana Paula ;
Dauber, Andrew ;
Macedo, Delanie B. ;
Noel, Sekoni D. ;
Brito, Vinicius N. ;
Gill, John C. ;
Cukier, Priscilla ;
Thompson, Iain R. ;
Navarro, Victor M. ;
Gagliardi, Priscila C. ;
Rodrigues, Tania ;
Kochi, Cristiane ;
Longui, Carlos Alberto ;
Beckers, Dominique ;
de Zegher, Francis ;
Montenegro, Luciana R. ;
Mendonca, Berenice B. ;
Carroll, Rona S. ;
Hirschhorn, Joel N. ;
Latronico, Ana Claudia ;
Kaiser, Ursula B. .
NEW ENGLAND JOURNAL OF MEDICINE, 2013, 368 (26) :2467-2475
[3]   Integrated Genomic Characterization of Papillary Thyroid Carcinoma [J].
Agrawal, Nishant ;
Akbani, Rehan ;
Aksoy, B. Arman ;
Ally, Adrian ;
Arachchi, Harindra ;
Asa, Sylvia L. ;
Auman, J. Todd ;
Balasundaram, Miruna ;
Balu, Saianand ;
Baylin, Stephen B. ;
Behera, Madhusmita ;
Bernard, Brady ;
Beroukhim, Rameen ;
Bishop, Justin A. ;
Black, Aaron D. ;
Bodenheimer, Tom ;
Boice, Lori ;
Bootwalla, Moiz S. ;
Bowen, Jay ;
Bowlby, Reanne ;
Bristow, Christopher A. ;
Brookens, Robin ;
Brooks, Denise ;
Bryant, Robert ;
Buda, Elizabeth ;
Butterfield, Yaron S. N. ;
Carling, Tobias ;
Carlsen, Rebecca ;
Carter, Scott L. ;
Carty, Sally E. ;
Chan, Timothy A. ;
Chen, Amy Y. ;
Cherniack, Andrew D. ;
Cheung, Dorothy ;
Chin, Lynda ;
Cho, Juok ;
Chu, Andy ;
Chuah, Eric ;
Cibulskis, Kristian ;
Ciriello, Giovanni ;
Clarke, Amanda ;
Clayman, Gary L. ;
Cope, Leslie ;
Copland, John A. ;
Covington, Kyle ;
Danilova, Ludmila ;
Davidsen, Tanja ;
Demchok, John A. ;
DiCara, Daniel ;
Dhalla, Noreen .
CELL, 2014, 159 (03) :676-690
[4]   Exomic Sequencing of Medullary Thyroid Cancer Reveals Dominant and Mutually Exclusive Oncogenic Mutations in RET and RAS [J].
Agrawal, Nishant ;
Jiao, Yuchen ;
Sausen, Mark ;
Leary, Rebecca ;
Bettegowda, Chetan ;
Roberts, Nicholas J. ;
Bhan, Sheetal ;
Ho, Allen S. ;
Khan, Zubair ;
Bishop, Justin ;
Westra, William H. ;
Wood, Laura D. ;
Hruban, Ralph H. ;
Tufano, Ralph P. ;
Robinson, Bruce ;
Dralle, Henning ;
Toledo, Sergio P. A. ;
Toledo, Rodrigo A. ;
Morris, Luc G. T. ;
Ghossein, Ronald A. ;
Fagin, James A. ;
Chan, Timothy A. ;
Velculescu, Victor E. ;
Vogelstein, Bert ;
Kinzler, Kenneth W. ;
Papadopoulos, Nickolas ;
Nelkin, Barry D. ;
Ball, Douglas W. .
JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, 2013, 98 (02) :E364-E369
[5]   Understanding the genetic aetiology in patients with XY DSD [J].
Ahmed, S. F. ;
Bashamboo, A. ;
Lucas-Herald, A. ;
McElreavey, K. .
BRITISH MEDICAL BULLETIN, 2013, 106 (01) :67-89
[6]   Preoperative Diagnosis of Benign Thyroid Nodules with Indeterminate Cytology [J].
Alexander, Erik K. ;
Kennedy, Giulia C. ;
Baloch, Zubair W. ;
Cibas, Edmund S. ;
Chudova, Darya ;
Diggans, James ;
Friedman, Lyssa ;
Kloos, Richard T. ;
LiVolsi, Virginia A. ;
Mandel, Susan J. ;
Raab, Stephen S. ;
Rosai, Juan ;
Steward, David L. ;
Walsh, P. Sean ;
Wilde, Jonathan I. ;
Zeiger, Martha A. ;
Lanman, Richard B. ;
Haugen, Bryan R. .
NEW ENGLAND JOURNAL OF MEDICINE, 2012, 367 (08) :705-715
[7]   An integrated map of genetic variation from 1,092 human genomes [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Schmidt, Jeanette P. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Dinh, Huyen ;
Kovar, Christie ;
Lee, Sandra ;
Lewis, Lora ;
Muzny, Donna ;
Reid, Jeff ;
Wang, Min ;
Wang, Jun ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Li, Zhuo ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Su, Zhe ;
Tai, Shuaishuai ;
Tang, Meifang .
NATURE, 2012, 491 (7422) :56-65
[8]   Targeted massively parallel sequencing provides comprehensive genetic diagnosis for patients with disorders of sex development [J].
Arboleda, V. A. ;
Lee, H. ;
Sanchez, F. J. ;
Delot, E. C. ;
Sandberg, D. E. ;
Grody, W. W. ;
Nelson, S. F. ;
Vilain, E. .
CLINICAL GENETICS, 2013, 83 (01) :35-43
[9]   Exome sequencing as a tool for Mendelian disease gene discovery [J].
Bamshad, Michael J. ;
Ng, Sarah B. ;
Bigham, Abigail W. ;
Tabor, Holly K. ;
Emond, Mary J. ;
Nickerson, Deborah A. ;
Shendure, Jay .
NATURE REVIEWS GENETICS, 2011, 12 (11) :745-755
[10]   Confirming Variants in Next-Generation Sequencing Panel Testing by Sanger Sequencing [J].
Baudhuin, Linnea M. ;
Lagerstedt, Susan A. ;
Klee, Eric W. ;
Fadra, Numrah ;
Oglesbee, Devin ;
Ferber, Matthew J. .
JOURNAL OF MOLECULAR DIAGNOSTICS, 2015, 17 (04) :456-461