Percolation Theory Reveals Biophysical Properties of Virus-like Particles

被引:9
作者
Brunk, Nicholas E. [1 ,2 ,3 ]
Twarock, Reidun [4 ]
机构
[1] Wolfram Res, Champaign, IL 61820 USA
[2] VeriSIM Life, San Francisco, CA 94104 USA
[3] Indiana Univ, Intelligent Syst Engn, Bloomington, IN 47408 USA
[4] Univ York, York Cross Disciplinary Ctr Syst Anal, Dept Math, York, N Yorkshire, England
基金
英国工程与自然科学研究理事会; 英国惠康基金;
关键词
virus-like particle; virus disassembly; percolation theory; virus nanotechnology; generalized quasi-equivalence principle; THRESHOLDS;
D O I
10.1021/acsnano.1c01882
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The viral protein containers that encapsulate a virus' genetic material are repurposed as virus-like particles in a host of nanotechnology applications, including cargo delivery, storage, catalysis, and vaccination. These viral architectures have evolved to sit on the knife's edge between stability, to provide adequate protection for their genetic cargoes, and instability, to enable their efficient and timely release in the host cell environment upon environmental cues. By introducing a percolation theory for viral capsids, we demonstrate that the geometric characteristics of a viral capsid in terms of its subunit layout and intersubunit interaction network are key for its disassembly behavior. A comparative analysis of all alternative homogeneously tiled capsid structures of the same stoichiometry identifies evolutionary drivers favoring specific viral geometries in nature and offers a guide for virus-like particle design in nanotechnology.
引用
收藏
页码:12988 / 12995
页数:8
相关论文
共 41 条
[1]  
Brunk N. E., 2020, NANOPARTICLE ASSEMBL
[2]   Linker-Mediated Assembly of Virus-Like Particles into Ordered Arrays via Electrostatic Control [J].
Brunk, Nicholas E. ;
Uchida, Masaki ;
Lee, Byeongdu ;
Fukuto, Masafumi ;
Yang, Lin ;
Douglas, Trevor ;
Jadhao, Vikram .
ACS APPLIED BIO MATERIALS, 2019, 2 (05) :2192-2201
[3]   Computational studies of shape control of charged deformable nanocontainers [J].
Brunk, Nicholas E. ;
Jadhao, Vikram .
JOURNAL OF MATERIALS CHEMISTRY B, 2019, 7 (41) :6370-6382
[4]   Molecular jenga: the percolation phase transition (collapse) in virus capsids [J].
Brunk, Nicholas E. ;
Lee, Lye Siang ;
Glazier, James A. ;
Butske, William ;
Zlotnick, Adam .
PHYSICAL BIOLOGY, 2018, 15 (05)
[5]   PHYSICAL PRINCIPLES IN CONSTRUCTION OF REGULAR VIRUSES [J].
CASPAR, DLD ;
KLUG, A .
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 1962, 27 :1-&
[6]   STRUCTURE OF SMALL VIRUSES [J].
CRICK, FHC ;
WATSON, JD .
NATURE, 1956, 177 (4506) :473-475
[7]   Plant viruses and bacteriophages for drug delivery in medicine and biotechnology [J].
Czapar, Anna E. ;
Steinmetz, Nicole F. .
CURRENT OPINION IN CHEMICAL BIOLOGY, 2017, 38 :108-116
[8]   Viruses: Making friends with old foes [J].
Douglas, T ;
Young, M .
SCIENCE, 2006, 312 (5775) :873-875
[9]   Host-guest encapsulation of materials by assembled virus protein cages [J].
Douglas, T ;
Young, M .
NATURE, 1998, 393 (6681) :152-155
[10]   Effects of RNA branching on the electrostatic stabilization of viruses [J].
Erdemci-Tandogan, Gonca ;
Wagner, Jef ;
van der Schoot, Paul ;
Podgornik, Rudolf ;
Zandi, Roya .
PHYSICAL REVIEW E, 2016, 94 (02)