Somatic Mutagenesis in Mammals and Its Implications for Human Disease and Aging

被引:79
作者
Zhang, Lei [1 ]
Vijg, Jan [1 ]
机构
[1] Albert Einstein Coll Med, Dept Genet, Bronx, NY 10461 USA
来源
ANNUAL REVIEW OF GENETICS, VOL 52 | 2018年 / 52卷
基金
美国国家卫生研究院;
关键词
somatic mutation; tissue specificity; single-cell DNA sequencing; aging; cancer; COPY-NUMBER-VARIATION; DETECTABLE CLONAL MOSAICISM; WHOLE-GENOME AMPLIFICATION; SINGLE-CELL ANALYSIS; STRUCTURAL VARIATION; L1; RETROTRANSPOSITION; MUTATION DETECTION; DNA-REPLICATION; ANEUPLOIDY; CANCER;
D O I
10.1146/annurev-genet-120417-031501
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
DNA mutations as a consequence of errors during DNA damage repair, replication, or mitosis are the substrate for evolution. In multicellular organisms, mutations can occur in the germline and also in somatic tissues, where they are associated with cancer and other chronic diseases and possibly with aging. Recent advances in high-throughput sequencing have made it relatively easy to study germline de novo mutations, but in somatic cells, the vast majority of mutations are low-abundant and can be detected only in clonal lineages, such as tumors, or single cells. Here we review recent results on somatic mutations in normal human and animal tissues with a focus on their possible functional consequences.
引用
收藏
页码:397 / 419
页数:23
相关论文
共 138 条
[42]   Resolving rates of mutation in the brain using single-neuron genomics [J].
Evrony, Gilad D. ;
Lee, Eunjung ;
Park, Peter J. ;
Walsh, Christopher A. .
ELIFE, 2016, 5
[43]   Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain [J].
Evrony, Gilad D. ;
Cai, Xuyu ;
Lee, Eunjung ;
Hills, L. Benjamin ;
Elhosary, Princess C. ;
Lehmann, Hillel S. ;
Parker, J. J. ;
Atabay, Kutay D. ;
Gilmore, Edward C. ;
Poduri, Annapurna ;
Park, Peter J. ;
Walsh, Christopher A. .
CELL, 2012, 151 (03) :483-496
[44]   Retrotransposition of gene transcripts leads to structural variation in mammalian genomes [J].
Ewing, Adam D. ;
Ballinger, Tracy J. ;
Earl, Dent ;
Harris, Christopher C. ;
Ding, Li ;
Wilson, Richard K. ;
Haussler, David .
GENOME BIOLOGY, 2013, 14 (03)
[45]  
Faggioli F, 2014, METHODS MOL BIOL, V1136, P291, DOI 10.1007/978-1-4939-0329-0_14
[46]   Chromosome-specific accumulation of aneuploidy in the aging mouse brain [J].
Faggioli, Francesca ;
Wang, Tao ;
Vijg, Jan ;
Montagna, Cristina .
HUMAN MOLECULAR GENETICS, 2012, 21 (24) :5246-5253
[47]   Chromosomal aneuploidy in the aging brain [J].
Faggioli, Francesca ;
Vijg, Jan ;
Montagna, Cristina .
MECHANISMS OF AGEING AND DEVELOPMENT, 2011, 132 (8-9) :429-436
[48]  
FAILLA G, 1958, ANN NY ACAD SCI, V71, P1124, DOI 10.1111/j.1749-6632.1958.tb46828.x
[49]   History and evolution of cytogenetics [J].
Ferguson-Smith, Malcolm A. .
MOLECULAR CYTOGENETICS, 2015, 8
[50]   Structural variation in the human genome [J].
Feuk, L ;
Carson, AR ;
Scherer, SW .
NATURE REVIEWS GENETICS, 2006, 7 (02) :85-97