Nects of pathological mutations on the stability of a conserved amino acid triad in retinoschisin

被引:27
作者
Fraternali, F
Cavallo, L
Musco, G
机构
[1] DIBIT, Dulbecco Telethon Inst, I-20132 Milan, Italy
[2] Natl Inst Med Res, Dept Math Biol, London NW7 1AA, England
[3] Univ Salerno, Dipartimento Chim, I-84081 Baronissi, SA, Italy
关键词
retinoschisis; discoidin domain; pathological mutation; membrane binding site; molecular dynamics; ab initio energy calculation;
D O I
10.1016/S0014-5793(03)00433-2
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A three-dimensional model has been calculated for the discoidin domain of retinoschisin (RSI), the protein involved in the X-linked juvenile retinoschisis. The model allows for a mapping of the pathological retinoschisis missense mutations and a rationale for the structural effects of an evolutionary conserved surface exposed triad (W122-R200-W163). Molecular dynamics simulations of the triad mutants models, together with ab initio energy calculations of the complexes corresponding to the triad show that the observed pathological mutations sensibly destabilize local interactions and the entire fold. Moreover the presented model reveals evidence of a putative site for membrane association. (C) 2003 Published by Elsevier Science B.V. on behalf of the Federation of European Biochemical Societies.
引用
收藏
页码:21 / 26
页数:6
相关论文
共 36 条
[1]   ESSENTIAL DYNAMICS OF PROTEINS [J].
AMADEI, A ;
LINSSEN, ABM ;
BERENDSEN, HJC .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1993, 17 (04) :412-425
[2]   Modularity and homology: Modelling of the titin type I modules and their interfaces [J].
Amodeo, P ;
Fraternali, F ;
Lesk, AM ;
Pastore, A .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 311 (02) :283-296
[3]   Theoretical study of the addition of hydrogen cyanide to methanimine in the gas phase and in aqueous solution [J].
Arnaud, R ;
Adamo, C ;
Cossi, M ;
Milet, A ;
Vallée, Y ;
Barone, V .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (02) :324-330
[4]   The discoidin domain family revisited: New members from prokaryotes and a homology-based fold prediction [J].
Baumgartner, S ;
Hofmann, K ;
Chiquet-Ehrismann, R ;
Bucher, P .
PROTEIN SCIENCE, 1998, 7 (07) :1626-1631
[5]   CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS [J].
BOYS, SF ;
BERNARDI, F .
MOLECULAR PHYSICS, 1970, 19 (04) :553-&
[6]   Ab initio study of solvated molecules: A new implementation of the polarizable continuum model [J].
Cossi, M ;
Barone, V ;
Cammi, R ;
Tomasi, J .
CHEMICAL PHYSICS LETTERS, 1996, 255 (4-6) :327-335
[7]   ACETYLCHOLINE BINDING BY A SYNTHETIC RECEPTOR - IMPLICATIONS FOR BIOLOGICAL RECOGNITION [J].
DOUGHERTY, DA ;
STAUFFER, DA .
SCIENCE, 1990, 250 (4987) :1558-1560
[8]  
Foresman J.B., 1996, EXPLORING CHEM ELECT
[9]  
FORSIUS H, 1973, CAN J OPHTHALMOL, V8, P385
[10]   Parameter optimized surfaces (POPS): analysis of key interactions and conformational changes in the ribosome [J].
Fraternali, F ;
Cavallo, L .
NUCLEIC ACIDS RESEARCH, 2002, 30 (13) :2950-2960