Solid state NMR sequential resonance assignments and conformational analysis of the 2 x 10.4 kDa dimeric form of the Bacillus subtilis protein Crh

被引:136
作者
Böckmann, A
Lange, A
Galinier, A
Luca, S
Giraud, N
Juy, M
Heise, H
Montserret, R
Penin, F
Baldus, M
机构
[1] CNRS, UMR 5086, Inst Biol & Chim Prot, F-69367 Lyon 07, France
[2] Max Planck Inst Biophys Chem, D-37077 Gottingen, Germany
[3] CNRS, UPR 9043, Inst Biol Struct & Microbiol, F-13402 Marseille 20, France
关键词
assignments; catabolite repression histidine-containing phosphocarrier protein (Crh); MAS; protein dynamics; protein structure; solid state NMR spectroscopy;
D O I
10.1023/A:1025820611009
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Solid state NMR sample preparation and resonance assignments of the U-[C-13, N-15] 2 x 10.4 kDa dimeric form of the regulatory protein Crh in microcrystalline, PEG precipitated form are presented. Intra - and interresidue correlations using dipolar polarization transfer methods led to nearly complete sequential assignments of the protein, and to 88% of all N-15, C-13 chemical shifts. For several residues, the resonance assignments differ significantly from those reported for the monomeric form analyzed by solution state NMR. Dihedral angles obtained from a TALOS-based statistical analysis suggest that the microcrystalline arrangement of Crh must be similar to the domain-swapped dimeric structure of a single crystal form recently solved using X-ray crystallography. For a limited number of protein residues, a remarkable doubling of the observed NMR resonances is observed indicative of local static or dynamic conformational disorder. Our study reports resonance assignments for the largest protein investigated by solid state NMR so far and describes the conformational dimeric variant of Crh with previously unknown chemical shifts.
引用
收藏
页码:323 / 339
页数:17
相关论文
共 53 条
[1]   NUCLEAR MAGNETIC RESONANCE SPECTRA FROM A CRYSTAL ROTATED AT HIGH SPEED [J].
ANDREW, ER ;
BRADBURY, A ;
EADES, RG .
NATURE, 1958, 182 (4650) :1659-1659
[2]  
Baldus M, 1998, MOL PHYS, V95, P1197, DOI 10.1080/00268979809483251
[3]   Correlation experiments for assignment and structure elucidation of immobilized polypeptides under magic angle spinning [J].
Baldus, M .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2002, 41 (1-2) :1-47
[4]   Broadband dipolar recoupling in rotating solids: a numerical comparison of some pulse schemes [J].
Baldus, M ;
Geurts, DG ;
Meier, BH .
SOLID STATE NUCLEAR MAGNETIC RESONANCE, 1998, 11 (3-4) :157-168
[5]   HETERONUCLEAR DECOUPLING IN ROTATING SOLIDS [J].
BENNETT, AE ;
RIENSTRA, CM ;
AUGER, M ;
LAKSHMI, KV ;
GRIFFIN, RG .
JOURNAL OF CHEMICAL PHYSICS, 1995, 103 (16) :6951-6958
[6]   CHEMICAL-SHIFT CORRELATION SPECTROSCOPY IN ROTATING SOLIDS - RADIO FREQUENCY-DRIVEN DIPOLAR RECOUPLING AND LONGITUDINAL EXCHANGE [J].
BENNETT, AE ;
OK, JH ;
GRIFFIN, RG ;
VEGA, S .
JOURNAL OF CHEMICAL PHYSICS, 1992, 96 (11) :8624-8627
[7]   ON THE INTERACTION OF NUCLEAR SPINS IN A CRYSTALLINE LATTICE [J].
BLOEMBERGEN, N .
PHYSICA, 1949, 15 (3-4) :386-426
[8]  
BOCKMANN A, 2002, ENCY NMR
[9]   Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy [J].
Castellani, F ;
van Rossum, B ;
Diehl, A ;
Schubert, M ;
Rehbein, K ;
Oschkinat, H .
NATURE, 2002, 420 (6911) :98-102
[10]   Protein backbone angle restraints from searching a database for chemical shift and sequence homology [J].
Cornilescu, G ;
Delaglio, F ;
Bax, A .
JOURNAL OF BIOMOLECULAR NMR, 1999, 13 (03) :289-302