Cucurbit aphid-borne yellows virus from melon plants in Brazil is an interspecific recombinant

被引：14

作者：

Costa, Thiago Marques ^{[1
]}

Blawid, Rosana ^{[1
]}

Aranda, Miguel A. ^{[2
]}

Sansini Freitas, Debora Maria ^{[3
]}

Andrade, Genira Pereira ^{[4
]}

Inoue-Nagata, Alice Kazuko ^{[5
]}

Nagata, Tatsuya ^{[1
]}

机构：

[1] Univ Brasilia, Dept Biol Celular, Campus Darcy Ribeiro, BR-70910900 Brasilia, DF, Brazil

[2] CSIC, CEBAS, Murcia 30100, Spain

[3] Embrapa Semiarido, BR-56302970 Petrolina, PE, Brazil

[4] Univ Fed Rural Pernambuco, Dept Agron, BR-52171900 Recife, PE, Brazil

[5] Embrapa Hortalicas, BR-70275970 Brasilia, DF, Brazil

来源：

ARCHIVES OF VIROLOGY | 2019年 / 164卷 / 01期

关键词：

COMPLETE GENOME SEQUENCE; DISEASE; MODELS; CROPS;

D O I：

10.1007/s00705-018-4024-2

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

Melon plants with severe yellowing symptoms from in Brazil were analyzed by high-throughput sequencing. Sequences homologous to the genome of the polerovirus cucurbit aphid-borne yellows virus (CABYV) were frequently retrieved. Two draft CABYV genomes were assembled from two pooled melon samples that contained an identical putative recombinant fragment in the 3 region with an unknown polerovirus. The complete genomes of these isolates revealed by Sanger sequencing share 96.8% nucleotide identity, while both sequences share 73.7% nucleotide identity with a CABYV-N isolate from France. A molecular-clock analysis suggested that CABYV was introduced into Brazil similar to 68years ago.

引用

页码：249 / 254

页数：6

共 25 条

[21] Evaluation of methods for detecting recombination from DNA sequences: Empirical data [J].

Posada, D .

MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (05) :708-717

[22] Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen) [J].

Rambaut, Andrew ;

Lam, Tommy T. ;

Carvalho, Luiz Max ;

Pybus, Oliver G. .

VIRUS EVOLUTION, 2016, 2 (01)

[23] MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space [J].

Ronquist, Fredrik ;

Teslenko, Maxim ;

van der Mark, Paul ;

Ayres, Daniel L. ;

Darling, Aaron ;

Hohna, Sebastian ;

Larget, Bret ;

Liu, Liang ;

Suchard, Marc A. ;

Huelsenbeck, John P. .

SYSTEMATIC BIOLOGY, 2012, 61 (03) :539-542

[24] Discovery of a Small Non-AUG-Initiated ORF in Poleroviruses and Luteoviruses That Is Required for Long-Distance Movement [J].

Smirnova, Ekaterina ;

Firth, Andrew E. ;

Miller, W. Allen ;

Scheidecker, Daniele ;

Brault, Veronique ;

Reinbold, Catherine ;

Rakotondrafara, Aurelie M. ;

Chung, Betty Y. -W. ;

Ziegler-Graff, Veronique .

PLOS PATHOGENS, 2015, 11 (05)

[25] The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events [J].

Stainton, Daisy ;

Martin, Darren P. ;

Muhire, Brejnev M. ;

Lolohea, Samiuela ;

Halafihi, Mana'ia ;

Lepoint, Pascale ;

Blomme, Guy ;

Crew, Kathleen S. ;

Sharman, Murray ;

Kraberger, Simona ;

Dayaram, Anisha ;

Walters, Matthew ;

Collings, David A. ;

Mabvakure, Batsirai ;

Lemey, Philippe ;

Harkins, Gordon W. ;

Thomas, John E. ;

Varsani, Arvind .

VIRUS EVOLUTION, 2015, 1 (01)

← 1 2 3 →