Resources for phylogenomic analyses of Australian terrestrial vertebrates

被引:14
作者
Bragg, Jason G. [1 ,2 ,9 ]
Potter, Sally [1 ,2 ]
Bi, Ke [3 ]
Catullo, Renee [4 ]
Donnellan, Stephen C. [5 ]
Eldridge, Mark D. B. [6 ]
Joseph, Leo [7 ]
Keogh, J. Scott [1 ,2 ]
Oliver, Paul [1 ,2 ]
Rowe, Kevin C. [8 ]
Moritz, Craig [1 ,2 ]
机构
[1] Australian Natl Univ, Res Sch Biol, Canberra, ACT 0200, Australia
[2] Australian Natl Univ, Ctr Biodivers Anal, Canberra, ACT 0200, Australia
[3] Univ Calif Berkeley, Calif Inst Quantitat Biosci QB3, CGRL, Berkeley, CA 94720 USA
[4] Macquarie Univ, Biol Sci, Sydney, NSW 2109, Australia
[5] South Australian Museum, North Terrace, Adelaide, SA 500, Australia
[6] Australian Museum, Res Inst, 1 William St, Sydney, NSW 2010, Australia
[7] Commonwealth Sci & Ind Res Org, Natl Res Collect Australia, GPO Box 1700, Canberra, ACT 2601, Australia
[8] Museum Victoria, Melbourne, Vic 3001, Australia
[9] Royal Bot Gardens & Domain Trust, Natl Herbarium NSW, Sydney, NSW 2000, Australia
关键词
amphibians; birds; mammals; phylogenomics; reptiles; transcriptomics; SPECIES DELIMITATION; TARGETED CAPTURE; GENOME; EVOLUTIONARY; ALIGNMENT; TREE; SYSTEMATICS; ENRICHMENT; DIVERSITY; RADIATION;
D O I
10.1111/1755-0998.12633
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
High-throughput sequencing methods promise to improve our ability to infer the evolutionary histories of lineages and to delimit species. These are exciting prospects for the study of Australian vertebrates, a group comprised of many globally unique lineages with a long history of isolation. The evolutionary relationships within many of these lineages have been difficult to resolve with small numbers of loci, and we now know that many lineages also exhibit substantial cryptic diversity. Here, we present a set of phylogenetically diverse transcriptome resources to enable exon-based sequence capture studies of Australian vertebrates, including transcriptome sequences for four species of birds, four frogs, seven lizards and seven mammals. We also use exon data from the marsupial transcriptomes we generated to examine an approach for choosing a moderate number (dozens or hundreds) of phylogenetically informative exons based on a single transcriptome sequence, and a relatively distant reference genome.
引用
收藏
页码:869 / 876
页数:8
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