Genome Sequences of Six Pseudoalteromonas Strains Isolated from Arctic Sea Ice

被引:18
作者
Bian, Fei [1 ,2 ]
Xie, Bin-Bin [1 ]
Qin, Qi-Long [1 ]
Shu, Yan-Li [1 ]
Zhang, Xi-Ying [1 ]
Yu, Yong [3 ]
Chen, Bo [3 ]
Chen, Xiu-Lan [1 ]
Zhou, Bai-Cheng [1 ]
Zhang, Yu-Zhong [1 ]
机构
[1] Shandong Univ, Marine Biotechnol Res Ctr, State Key Lab Microbial Technol, Jinan 250100, Peoples R China
[2] Shandong Univ, Minist Educ, Key Lab Colloid & Interface Chem, Jinan 250100, Peoples R China
[3] Polar Res Inst China, SOA Key Lab Polar Sci, Shanghai, Peoples R China
基金
中国国家自然科学基金;
关键词
LIFE-STYLE; SP-NOV; BACTERIUM; ALTEROMONAS; SEDIMENT; REVEALS; GENES;
D O I
10.1128/JB.06427-11
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Yu et al. (Polar Biol. 32:1539-1547, 2009) isolated 199 Pseudoalteromonas strains from Arctic sea ice. We sequenced the genomes of six of these strains, which are affiliated to different Pseudoalteromonas species based on 16S rRNA gene sequences, facilitating the study of physiology and adaptation of Arctic sea ice Pseudoalteromonas strains.
引用
收藏
页码:908 / 909
页数:2
相关论文
共 14 条
[1]   ALTEROMONAS-ATLANTICA SP-NOV AND ALTEROMONAS-CARRAGEENOVORA SP-NOV, BACTERIA THAT DECOMPOSE ALGAL POLYSACCHARIDES [J].
AKAGAWAMATSUSHITA, M ;
MATSUO, M ;
KOGA, Y ;
YAMASATO, K .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1992, 42 (04) :621-627
[2]   Pseudoalteromonas arctica sp nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen [J].
Al Khudary, Rami ;
Stoesser, Nele Isabelle ;
Qoura, Farah ;
Antranikian, Garabed .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :2018-2024
[3]   Pseudoalteromonas prydzensis sp. nov., a psychrotrophic, halotolerant bacterium from Antarctic sea ice [J].
Bowman, JP .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1998, 48 :1037-1041
[4]   Pseudoalteromonas antarctica sp nov, isolated from an Antarctic coastal environment [J].
Bozal, N ;
Tudela, E ;
RosselloMora, R ;
Lalucat, J ;
Guinea, J .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1997, 47 (02) :345-351
[5]   2 NEW SPECIES OF ALTEROMONAS - ALTEROMONAS-ESPEJIANA AND ALTEROMONAS-UNDINA [J].
CHAN, KY ;
BAUMANN, L ;
GARZA, MM ;
BAUMANN, P .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1978, 28 (02) :217-222
[6]   Two different proteases produced by a deep-sea psychrotrophic bacterial strain, Pseudoaltermonas sp SM9913 [J].
Chen, XL ;
Zhang, YZ ;
Gao, PJ ;
Luan, XW .
MARINE BIOLOGY, 2003, 143 (05) :989-993
[7]   Identifying bacterial genes and endosymbiont DNA with Glimmer [J].
Delcher, Arthur L. ;
Bratke, Kirsten A. ;
Powers, Edwin C. ;
Salzberg, Steven L. .
BIOINFORMATICS, 2007, 23 (06) :673-679
[8]   Genome sequencing in microfabricated high-density picolitre reactors [J].
Margulies, M ;
Egholm, M ;
Altman, WE ;
Attiya, S ;
Bader, JS ;
Bemben, LA ;
Berka, J ;
Braverman, MS ;
Chen, YJ ;
Chen, ZT ;
Dewell, SB ;
Du, L ;
Fierro, JM ;
Gomes, XV ;
Godwin, BC ;
He, W ;
Helgesen, S ;
Ho, CH ;
Irzyk, GP ;
Jando, SC ;
Alenquer, MLI ;
Jarvie, TP ;
Jirage, KB ;
Kim, JB ;
Knight, JR ;
Lanza, JR ;
Leamon, JH ;
Lefkowitz, SM ;
Lei, M ;
Li, J ;
Lohman, KL ;
Lu, H ;
Makhijani, VB ;
McDade, KE ;
McKenna, MP ;
Myers, EW ;
Nickerson, E ;
Nobile, JR ;
Plant, R ;
Puc, BP ;
Ronan, MT ;
Roth, GT ;
Sarkis, GJ ;
Simons, JF ;
Simpson, JW ;
Srinivasan, M ;
Tartaro, KR ;
Tomasz, A ;
Vogt, KA ;
Volkmer, GA .
NATURE, 2005, 437 (7057) :376-380
[9]   Coping with cold:: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 [J].
Médigue, C ;
Krin, E ;
Pascal, G ;
Barbe, V ;
Bernsel, A ;
Bertin, PN ;
Cheung, F ;
Cruveiller, S ;
D'Amico, S ;
Duilio, A ;
Fang, G ;
Feller, G ;
Ho, C ;
Mangenot, S ;
Marino, G ;
Nilsson, J ;
Parrilli, E ;
Rocha, EPC ;
Rouy, Z ;
Sekowska, A ;
Tutino, ML ;
Vallenet, D ;
von Heijne, G ;
Danchin, A .
GENOME RESEARCH, 2005, 15 (10) :1325-1335
[10]   KEGG: Kyoto Encyclopedia of Genes and Genomes [J].
Ogata, H ;
Goto, S ;
Sato, K ;
Fujibuchi, W ;
Bono, H ;
Kanehisa, M .
NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :29-34