Comprehensive genomic profiling of IgM multiple myeloma identifies IRF4 as a prognostic marker

被引:6
作者
Ryu, Daeun [1 ,4 ]
Kim, Hee Jin [2 ]
Joung, Je-Gun [1 ]
Lee, Hae-Ock [1 ,5 ]
Bae, Joon Seol [1 ]
Kim, Seok Jin [3 ]
Kim, Haesu [3 ]
Park, Woong-Yang [1 ,4 ,5 ]
Kim, Kihyun [3 ]
机构
[1] Sungkyunkwan Univ, Samsung Genome Inst, Sch Med, Seoul, South Korea
[2] Sungkyunkwan Univ, Dept Lab Med & Genet, Sch Med, Seoul, South Korea
[3] Sungkyunkwan Univ, Sch Med, Samsung Med Ctr, Div Hematol Oncol,Dept Med, Seoul, South Korea
[4] Sungkyunkwan Univ, Sch Med, Samsung Adv Inst Hlth Sci & Technol, Dept Hlth Sci & Technol, Seoul, South Korea
[5] Sungkyunkwan Univ, Dept Mol Cell Biol, Sch Med, Seoul, South Korea
关键词
multiple myeloma; IgM; IRF4; progression-free survival; sequencing; WALDENSTROM MACROGLOBULINEMIA; HETEROGENEITY; MUTATIONS; EXPRESSION; EXOSOME; MYD88; DIS3;
D O I
10.18632/oncotarget.9478
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Immunoglobulin M multiple myeloma (IgM MM) is an extremely rare subtype of multiple myeloma with a poor clinical outcome. In this study, bone marrow aspirates of MM patients, including two cases of IgM MM, were analyzed by whole exome sequencing and RNA sequencing. Recurrent somatic mutations in the NRAS, KRAS, CCND1, DIS3, and TP53 genes were found in IgM MM and other types of MM, in agreement with previous studies. Overall transcription profiles of IgM and other types of MM clustered together, but separate from normal blood or peripheral plasma cells. Among the differentially expressed genes in IgM MM, IRF4 was highly expressed in IgM as well as in a subset of other types of MM patients. Thus, IRF4 is an independent prognostic factor for general MM patients. Taken together, the somatic mutation and transcriptome profiles support the idea that IgM MM can be classified as an aggressive MM subtype.
引用
收藏
页码:47127 / 47133
页数:7
相关论文
共 36 条
[1]   Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers [J].
Agirre, Xabier ;
Castellano, Giancarlo ;
Pascual, Marien ;
Heath, Simon ;
Kulis, Marta ;
Segura, Victor ;
Bergmann, Anke ;
Esteve, Anna ;
Merkel, Angelika ;
Raineri, Emanuele ;
Agueda, Lidia ;
Blanc, Julie ;
Richardson, David ;
Clarke, Laura ;
Datta, Avik ;
Russinol, Nuria ;
Queiros, Ana C. ;
Beekman, Renee ;
Rodriguez-Madoz, Juan R. ;
San Jose-Eneriz, Edurne ;
Fang, Fang ;
Gutierrez, Norma C. ;
Garcia-Verdugo, Jose M. ;
Robson, Michael I. ;
Schirmer, Eric C. ;
Guruceaga, Elisabeth ;
Martens, Joost H. A. ;
Gut, Marta ;
Calasanz, Maria J. ;
Flicek, Paul ;
Siebert, Reiner ;
Campo, Elias ;
San Miguel, Jesus F. ;
Melnick, Ari ;
Stunnenberg, Hendrik G. ;
Gut, Ivo G. ;
Prosper, Felipe ;
Martin-Subero, Jose I. .
GENOME RESEARCH, 2015, 25 (04) :478-487
[2]  
Anders S., 2010, GENOME BIOL, V11, pR106, DOI [10.1186/gb-2010-11-10-r106, DOI 10.1186/gb-2010-11-10-r106]
[3]   14q32 translocations discriminate IgM multiple myeloma from Waldenstrom's macroglobulinernia [J].
Avet-Loiseau, H ;
Garand, R ;
Lodé, L ;
Robillard, N ;
Bataille, R .
SEMINARS IN ONCOLOGY, 2003, 30 (02) :153-155
[4]   Improving overall survival and overcoming adverse prognosis in the treatment of cytogenetically high-risk multiple myeloma [J].
Bergsagel, P. Leif ;
Mateos, Maria-Victoria ;
Gutierrez, Norma C. ;
Rajkumar, S. Vincent ;
Miguel, Jesus F. San .
BLOOD, 2013, 121 (06) :884-892
[5]   Heterogeneity of genomic evolution and mutational profiles in multiple myeloma [J].
Bolli, Niccolo ;
Avet-Loiseau, Herve ;
Wedge, David C. ;
Van Loo, Peter ;
Alexandrov, Ludmil B. ;
Martincorena, Inigo ;
Dawson, Kevin J. ;
Iorio, Francesco ;
Nik-Zainal, Serena ;
Bignell, Graham R. ;
Hinton, Jonathan W. ;
Li, Yilong ;
Tubio, Jose M. C. ;
McLaren, Stuart ;
Meara, Sarah O' ;
Butler, Adam P. ;
Teague, Jon W. ;
Mudie, Laura ;
Anderson, Elizabeth ;
Rashid, Naim ;
Tai, Yu-Tzu ;
Shammas, Masood A. ;
Sperling, Adam S. ;
Fulciniti, Mariateresa ;
Richardson, Paul G. ;
Parmigiani, Giovanni ;
Magrangeas, Florence ;
Minvielle, Stephane ;
Moreau, Philippe ;
Attal, Michel ;
Facon, Thierry ;
Futreal, P. Andrew ;
Anderson, Kenneth C. ;
Campbell, Peter J. ;
Munshi, Nikhil C. .
NATURE COMMUNICATIONS, 2014, 5
[6]   Identification of a regulated pathway for nuclear pre-mRNA turnover [J].
Bousquet-Antonelli, C ;
Presutti, C ;
Tollervey, D .
CELL, 2000, 102 (06) :765-775
[7]   IMWG consensus on risk stratification in multiple myeloma [J].
Chng, W. J. ;
Dispenzieri, A. ;
Chim, C-S ;
Fonseca, R. ;
Goldschmidt, H. ;
Lentzsch, S. ;
Munshi, N. ;
Palumbo, A. ;
Miguel, J. S. ;
Sonneveld, P. ;
Cavo, M. ;
Usmani, S. ;
Durie, B. G. M. ;
Avet-Loiseau, H. .
LEUKEMIA, 2014, 28 (02) :269-277
[8]   Genetics of multiple myeloma: another heterogeneity level? [J].
Corre, Jill ;
Munshi, Nikhil ;
Avet-Loiseau, Herve .
BLOOD, 2015, 125 (12) :1870-1876
[9]  
DEGRAMONT A, 1990, REV MED INTERNE, V11, P13
[10]   Are you sure this is Waldenstrom macroglobulinemia? [J].
Ghobrial, Irene M. .
HEMATOLOGY-AMERICAN SOCIETY OF HEMATOLOGY EDUCATION PROGRAM, 2012, :586-594