Single-molecule Force Spectroscopy Approach to Enzyme Catalysis

被引:54
作者
Alegre-Cebollada, Jorge [1 ]
Perez-Jimenez, Raul [1 ]
Kosuri, Pallav [1 ,2 ]
Fernandez, Julio M.
机构
[1] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
[2] Columbia Univ, Dept Biochem & Mol Biophys, New York, NY 10027 USA
基金
美国国家卫生研究院;
关键词
DIHYDROFOLATE-REDUCTASE; THIOREDOXIN CATALYSIS; CLAMP SPECTROSCOPY; ENERGY LANDSCAPE; DISULFIDE BONDS; DYNAMICS; MECHANISM; KINETICS; PERSPECTIVE; UBIQUITIN;
D O I
10.1074/jbc.R109.011932
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Enzyme catalysis has been traditionally studied using a diverse set of techniques such as bulk biochemistry, x-ray crystallography, and NMR. Recently, single-molecule force spectroscopy by atomic force microscopy has been used as a new tool to study the catalytic properties of an enzyme. In this approach, a mechanical force ranging up to hundreds of piconewtons is applied to the substrate of an enzymatic reaction, altering the conformational energy of the substrate-enzyme interactions during catalysis. From these measurements, the force dependence of an enzymatic reaction can be determined. The force dependence provides valuable new information about the dynamics of enzyme catalysis with sub-angstrom resolution, a feat unmatched by any other current technique. To date, single-molecule force spectroscopy has been applied to gain insight into the reduction of disulfide bonds by different enzymes of the thioredoxin family. This minireview aims to present a perspective on this new approach to study enzyme catalysis and to summarize the results that have already been obtained from it. Finally, the specific requirements that must be fulfilled to apply this new methodology to any other enzyme will be discussed.
引用
收藏
页码:18961 / 18966
页数:6
相关论文
共 50 条
[1]   Contour length and refolding rate of a small protein controlled by engineered disulfide bonds [J].
Ainavarapu, Rama Koti ;
Brujic, Jasna ;
Huang, Hector H. ;
Wiita, Arun P. ;
Lu, Hui ;
Li, Lewyn ;
Walther, Kirstin A. ;
Carrion-Vazquez, Mariano ;
Li, Hongbin ;
Fernandez, Julio M. .
BIOPHYSICAL JOURNAL, 2007, 92 (01) :225-233
[2]   Single-molecule force spectroscopy measurements of bond elongation during a bimolecular reaction [J].
Ainavarapu, Sri Rama Koti ;
Wiita, Arun P. . ;
Dougan, Lorna ;
Uggerud, Einar ;
Fernandez, Julio M. . .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (20) :6479-6487
[3]   A single-molecule assay to directly identify solvent-accessible disulfide bonds and probe their effect on protein folding [J].
Ainavarapu, Sri Rama Koti ;
Wiita, Arun P. ;
Huang, Hector H. ;
Fernandez, Julio M. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2008, 130 (02) :436-+
[4]  
[Anonymous], 1994, CRC HDB CHEM PHYS
[5]   Conformation coupled enzyme catalysis: Single-molecule and transient kinetics investigation of dihydrofolate reductase [J].
Antikainen, NM ;
Smiley, RD ;
Benkovic, SJ ;
Hammes, GG .
BIOCHEMISTRY, 2005, 44 (51) :16835-16843
[6]   Kinesin moves by an asymmetric hand-over-hand mechanism [J].
Asbury, CL ;
Fehr, AN ;
Block, SM .
SCIENCE, 2003, 302 (5653) :2130-2134
[7]  
BELL GI, 1978, SCIENCE, V200, P618, DOI 10.1126/science.347575
[8]   A perspective on enzyme catalysis [J].
Benkovic, SJ ;
Hammes-Schiffer, S .
SCIENCE, 2003, 301 (5637) :1196-1202
[9]   Free-energy landscape of enzyme catalysis [J].
Benkovic, Stephen J. ;
Hammes, Gordon G. ;
Hammes-Schiffer, Sharon .
BIOCHEMISTRY, 2008, 47 (11) :3317-3321
[10]   Mechanochemistry: The mechanical activation of covalent bonds [J].
Beyer, MK ;
Clausen-Schaumann, H .
CHEMICAL REVIEWS, 2005, 105 (08) :2921-2948